Gm70418 Gene Detail

Summary

• Symbol
  Gm70418
• Name
  predicted gene, 70418

• Feature Type
  lncRNA gene
• IDs
  MGI:7823641
• Alliance
  gene page
• Transcription Start Sites
  7 TSS

Location &
Maps

• Sequence Map
  Chr1:187384330-187444307 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1447 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7823641	lncRNA gene	Chr1:187384330-187444307 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm70418
  

Sequences &
Gene Models

• All Sequences
  6

• Ensembl
  ENSMUSG00000129927 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000129927	Ensembl Gene Model | MGI Sequence Detail	59978	C57BL/6J
transcript	ENSMUST00000297052	Ensembl | MGI Sequence Detail	518	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm70418:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr10654	Chr1:187383708-187383731 (+)	-610 bp
Tssr10655	Chr1:187394316-187394328 (+)	9,992 bp
Tssr10656	Chr1:187394530-187394568 (+)	10,219 bp
Tssr10657	Chr1:187394573-187394581 (+)	10,247 bp
Tssr10658	Chr1:187394671-187394682 (+)	10,347 bp
Tssr10659	Chr1:187394684-187394705 (+)	10,365 bp
Tssr10660	Chr1:187424403-187424412 (+)	40,078 bp