Gm71631 Gene Detail

Summary

• Symbol
  Gm71631
• Name
  predicted gene, 71631

• Feature Type
  lncRNA gene
• IDs
  MGI:7826033
• Alliance
  gene page
• Transcription Start Sites
  10 TSS

Location &
Maps

• Sequence Map
  Chr1:171053712-171077688 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  741 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7826033	lncRNA gene	Chr1:171053712-171077688 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm71631
  

Sequences &
Gene Models

• All Sequences
  4

• Ensembl
  ENSMUSG00000127022 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000127022	Ensembl Gene Model | MGI Sequence Detail	23977	C57BL/6J
transcript	ENSMUST00000279666	Ensembl | MGI Sequence Detail	273	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm71631:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr15023	Chr1:171074665-171074690 (-)	3,010 bp
Tssr15022	Chr1:171068614-171068628 (-)	9,067 bp
Tssr15021	Chr1:171067676-171067685 (-)	10,007 bp
Tssr15020	Chr1:171065176-171065193 (-)	12,503 bp
Tssr15019	Chr1:171065167-171065175 (-)	12,517 bp
Tssr14995	Chr1:171053970-171053993 (-)	23,706 bp
Tssr14994	Chr1:171053881-171053892 (-)	23,801 bp
Tssr14993	Chr1:171053840-171053878 (-)	23,829 bp
Tssr14992	Chr1:171053766-171053790 (-)	23,910 bp
Tssr14991	Chr1:171053735-171053750 (-)	23,945 bp