Gm71725 Gene Detail

Summary

• Symbol
  Gm71725
• Name
  predicted gene, 71725

• Feature Type
  lncRNA gene
• IDs
  MGI:7826218
• Alliance
  gene page
• Transcription Start Sites
  26 TSS

Location &
Maps

• Sequence Map
  Chr7:19431043-19435224 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  169 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7826218	lncRNA gene	Chr7:19431043-19435224 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm71725
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  3
• Gene trapped
  3
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  4

• Ensembl
  ENSMUSG00000122751 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000122751	Ensembl Gene Model | MGI Sequence Detail	4182	C57BL/6J
transcript	ENSMUST00000254688	Ensembl | MGI Sequence Detail	790	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm71725:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr64880	Chr7:19430193-19430199 (+)	-847 bp
Tssr64881	Chr7:19430245-19430262 (+)	-789 bp
Tssr64882	Chr7:19430289-19430321 (+)	-738 bp
Tssr64883	Chr7:19430327-19430338 (+)	-710 bp
Tssr64884	Chr7:19430354-19430366 (+)	-683 bp
Tssr2112	Chr7:19430376-19430386 (+)	-662 bp
Tssr2113	Chr7:19430401-19430416 (+)	-634 bp
Tssr64885	Chr7:19430433-19430444 (+)	-604 bp
Tssr64886	Chr7:19430454-19430479 (+)	-576 bp
Tssr64887	Chr7:19430486-19430497 (+)	-551 bp
Tssr2114	Chr7:19430516-19430542 (+)	-514 bp
Tssr2115	Chr7:19430552-19430570 (+)	-482 bp
Tssr2116	Chr7:19430627-19430640 (+)	-409 bp
Tssr2117	Chr7:19430649-19430694 (+)	-371 bp
Tssr64888	Chr7:19430705-19430715 (+)	-333 bp
Tssr2118	Chr7:19430756-19430789 (+)	-270 bp
Tssr64889	Chr7:19430799-19430822 (+)	-232 bp
Tssr2120	Chr7:19430828-19430839 (+)	-209 bp
Tssr64890	Chr7:19430845-19430856 (+)	-192 bp
Tssr2121	Chr7:19430860-19430865 (+)	-180 bp
Tssr64891	Chr7:19430868-19430884 (+)	-167 bp
Tssr64892	Chr7:19430901-19430915 (+)	-135 bp
Tssr64893	Chr7:19430936-19431009 (+)	-70 bp
Tssr64894	Chr7:19431390-19431423 (+)	364 bp
Tssr64895	Chr7:19431486-19431502 (+)	451 bp
Tssr64896	Chr7:19431512-19431526 (+)	476 bp