Gm71942 Gene Detail

Summary

• Symbol
  Gm71942
• Name
  predicted gene, 71942

• Feature Type
  lncRNA gene
• IDs
  MGI:7826650
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr11:75515678-75521859 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  144 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7826650	lncRNA gene	Chr11:75515678-75521859 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm71942
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  9

• Ensembl
  ENSMUSG00000123200 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000123200	Ensembl Gene Model | MGI Sequence Detail	6182	C57BL/6J
transcript	ENSMUST00000256952	Ensembl | MGI Sequence Detail	1130	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm71942:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr109222	Chr11:75521624-75521633 (-)	230 bp
Tssr109221	Chr11:75521548-75521589 (-)	290 bp
Tssr109220	Chr11:75517543-75517559 (-)	4,308 bp