Gm72680 Gene Detail

Summary

• Symbol
  Gm72680
• Name
  predicted gene, 72680

• Feature Type
  lncRNA gene
• IDs
  MGI:7828122
• Alliance
  gene page
• Transcription Start Sites
  13 TSS

Location &
Maps

• Sequence Map
  Chr11:115968838-115969281 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  88 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7828122	lncRNA gene	Chr11:115968838-115969281 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm72680
  

Sequences &
Gene Models

• All Sequences
  3

• Ensembl
  ENSMUSG00000129007 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000129007	Ensembl Gene Model | MGI Sequence Detail	444	C57BL/6J
transcript	ENSMUST00000291150	Ensembl | MGI Sequence Detail	444	Not Applicable

References

• Summaries
  All 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm72680:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr111843	Chr11:115971167-115971179 (-)	-1,892 bp
Tssr111842	Chr11:115971106-115971142 (-)	-1,843 bp
Tssr111841	Chr11:115971089-115971100 (-)	-1,814 bp
Tssr111840	Chr11:115970614-115970625 (-)	-1,339 bp
Tssr111839	Chr11:115970592-115970611 (-)	-1,321 bp
Tssr111838	Chr11:115970380-115970428 (-)	-1,123 bp
Tssr111837	Chr11:115970265-115970293 (-)	-998 bp
Tssr111836	Chr11:115970180-115970209 (-)	-914 bp
Tssr111835	Chr11:115970147-115970161 (-)	-873 bp
Tssr111834	Chr11:115970075-115970118 (-)	-816 bp
Tssr111833	Chr11:115970059-115970070 (-)	-784 bp
Tssr111832	Chr11:115969972-115969983 (-)	-697 bp
Tssr111831	Chr11:115969252-115969290 (-)	10 bp