Gm72686 Gene Detail

Summary

• Symbol
  Gm72686
• Name
  predicted gene, 72686

• Feature Type
  lncRNA gene
• IDs
  MGI:7828134
• Alliance
  gene page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr5:33641681-33692976 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1356 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7828134	lncRNA gene	Chr5:33641681-33692976 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm72686
  

Sequences &
Gene Models

• All Sequences
  5

• Ensembl
  ENSMUSG00000136727 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000136727	Ensembl Gene Model | MGI Sequence Detail	51296	C57BL/6J
transcript	ENSMUST00000337409	Ensembl | MGI Sequence Detail	1226	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:85162 Hansen J, et al., A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Proc Natl Acad Sci U S A. 2003 Aug 19;100(17):9918-22
• Latest
  J:152068 Friedel RH, et al., EUCOMM--the European conditional mouse mutagenesis program. Brief Funct Genomic Proteomic. 2007 Sep;6(3):180-5

TSS for Gm72686:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr50607	Chr5:33692967-33692974 (-)	5 bp
Tssr50606	Chr5:33692799-33692831 (-)	161 bp
Tssr50605	Chr5:33681515-33681526 (-)	11,455 bp
Tssr50604	Chr5:33676314-33676325 (-)	16,656 bp
Tssr50603	Chr5:33650748-33650752 (-)	42,226 bp