Gm72923 Gene Detail

Summary

• Symbol
  Gm72923
• Name
  predicted gene, 72923

• Feature Type
  lncRNA gene
• IDs
  MGI:7828606
• Alliance
  gene page
• Transcription Start Sites
  13 TSS

Location &
Maps

• Sequence Map
  Chr11:69302144-69302881 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  44 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7828606	lncRNA gene	Chr11:69302144-69302881 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm72923
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  3

• Ensembl
  ENSMUSG00000130558 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000130558	Ensembl Gene Model | MGI Sequence Detail	738	C57BL/6J
transcript	ENSMUST00000300517	Ensembl | MGI Sequence Detail	738	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm72923:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr102458	Chr11:69300500-69300515 (+)	-1,636 bp
Tssr102459	Chr11:69300520-69300546 (+)	-1,611 bp
Tssr102460	Chr11:69300553-69300571 (+)	-1,582 bp
Tssr102461	Chr11:69300596-69300605 (+)	-1,543 bp
Tssr102462	Chr11:69300624-69300638 (+)	-1,513 bp
Tssr102463	Chr11:69301377-69301408 (+)	-751 bp
Tssr102464	Chr11:69301651-69301680 (+)	-478 bp
Tssr102465	Chr11:69301770-69301801 (+)	-358 bp
Tssr102466	Chr11:69301927-69301942 (+)	-209 bp
Tssr102467	Chr11:69302145-69302168 (+)	13 bp
Tssr102468	Chr11:69302181-69302209 (+)	51 bp
Tssr102469	Chr11:69302223-69302238 (+)	87 bp
Tssr102470	Chr11:69302791-69302812 (+)	658 bp