Gm73992 Gene Detail

Summary

• Symbol
  Gm73992
• Name
  predicted gene, 73992

• Feature Type
  lncRNA gene
• IDs
  MGI:7830728
• Alliance
  gene page
• Transcription Start Sites
  12 TSS

Location &
Maps

• Sequence Map
  Chr11:69553169-69559705 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  209 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7830728	lncRNA gene	Chr11:69553169-69559705 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm73992
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  7

• Ensembl
  ENSMUSG00000137776 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000137776	Ensembl Gene Model | MGI Sequence Detail	6537	C57BL/6J
transcript	ENSMUST00000343473	Ensembl | MGI Sequence Detail	1512	Not Applicable

References

• Summaries
  All 2

  Phenotypes 1
• Earliest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;
• Latest
  J:141210 Mouse Genome Informatics (MGI) and National Center for Biotechnology Information (NCBI), Mouse Gene Trap Data Load from dbGSS. Database Download. 2008;

TSS for Gm73992:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr102506	Chr11:69553179-69553206 (+)	24 bp
Tssr102507	Chr11:69553464-69553472 (+)	299 bp
Tssr102508	Chr11:69554996-69555010 (+)	1,834 bp
Tssr102509	Chr11:69555038-69555045 (+)	1,873 bp
Tssr102510	Chr11:69555151-69555179 (+)	1,996 bp
Tssr102511	Chr11:69555193-69555214 (+)	2,035 bp
Tssr102512	Chr11:69556427-69556462 (+)	3,276 bp
Tssr102513	Chr11:69556463-69556500 (+)	3,313 bp
Tssr102514	Chr11:69556508-69556530 (+)	3,350 bp
Tssr102515	Chr11:69556537-69556668 (+)	3,434 bp
Tssr102516	Chr11:69557298-69557319 (+)	4,140 bp
Tssr102517	Chr11:69557328-69557341 (+)	4,166 bp