Gm74397 Gene Detail

Summary

• Symbol
  Gm74397
• Name
  predicted gene, 74397

• Feature Type
  lncRNA gene
• IDs
  MGI:7831530
• Alliance
  gene page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr11:22549964-22571132 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  806 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_7831530	lncRNA gene	Chr11:22549964-22571132 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm74397
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  29
• Gene trapped
  29
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  25

• Ensembl
  ENSMUSG00000143742 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000143742	Ensembl Gene Model | MGI Sequence Detail	21169	C57BL/6J
transcript	ENSMUST00000378851	Ensembl | MGI Sequence Detail	1862	Not Applicable

References

• Summaries
  All 5

  Phenotypes 4
• Earliest
  J:85162 Hansen J, et al., A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Proc Natl Acad Sci U S A. 2003 Aug 19;100(17):9918-22
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm74397:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr107103	Chr11:22563461-22563470 (-)	7,666 bp
Tssr107102	Chr11:22560404-22560416 (-)	10,722 bp
Tssr107101	Chr11:22560381-22560396 (-)	10,743 bp
Tssr107100	Chr11:22560350-22560371 (-)	10,771 bp
Tssr107099	Chr11:22560331-22560344 (-)	10,794 bp