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Cnga1 Gene Detail
Summary
  • Symbol
    Cnga1
  • Name
    cyclic nucleotide gated channel alpha 1
  • Synonyms
    Cncg
  • Feature Type
    protein coding gene
  • IDs
    MGI:88436
    NCBI Gene: 12788
  • Alliance
    gene page
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:72761039-72800095 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, 38.44 cM
  • Mapping Data
    6 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1326 from dbSNP Build 142
  • Strain Annotations
    18
  • RFLP
    1
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_88436
 protein coding gene Chr5:72761039-72801618 (-)
129S1/SvImJ MGP_129S1SvImJ_G0029614
 protein coding gene Chr5:72540864-72583115 (-)
A/J MGP_AJ_G0029582
 protein coding gene Chr5:69836362-69877632 (-)
AKR/J MGP_AKRJ_G0029530
 protein coding gene Chr5:72073398-72115596 (-)
BALB/cJ MGP_BALBcJ_G0029590
 protein coding gene Chr5:70531726-70574221 (-)
C3H/HeJ MGP_C3HHeJ_G0029315
 protein coding gene Chr5:72428743-72477398 (-)
C57BL/6NJ MGP_C57BL6NJ_G0030045
 protein coding gene Chr5:75528467-75575677 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0027287
 protein coding gene Chr5:65544009-65584784 (-)
CAST/EiJ MGP_CASTEiJ_G0028724
 protein coding gene Chr5:71548855-71589065 (-)
CBA/J MGP_CBAJ_G0029283
 protein coding gene Chr5:77956992-77997534 (-)
DBA/2J MGP_DBA2J_G0029430
 protein coding gene Chr5:69878566-69918845 (-)
FVB/NJ MGP_FVBNJ_G0029390
 protein coding gene Chr5:69055786-69096995 (-)
LP/J MGP_LPJ_G0029514
 protein coding gene Chr5:72998973-73040631 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0029416
 protein coding gene Chr5:81326049-81369866 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0030079
 protein coding gene Chr5:71647380-71692084 (-)
PWK/PhJ MGP_PWKPhJ_G0028446
 protein coding gene Chr5:68859323-68900995 (-)
SPRET/EiJ MGP_SPRETEiJ_G0028279
 protein coding gene Chr5:70982985-71026659 (-)
WSB/EiJ MGP_WSBEiJ_G0028804
 protein coding gene Chr5:71928348-71970250 (-)



Homology
more
  • Human Ortholog
    CNGA1, cyclic nucleotide gated channel subunit alpha 1
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CNGA1, cyclic nucleotide gated channel subunit alpha 1
  • Synonyms
    CNCG, CNCG1, CNG-1, CNG1, RCNC1, RCNCa, RCNCalpha, RP49
  • Links
    NCBI Gene ID: 1259
    neXtProt AC: NX_P29973
    UniProt: P29973

  • Chr Location
    4p12; chr4:47935977-48016681 (-)  GRCh38
Human Diseases
more
  • Diseases
    1 with Cnga1 mouse models; 2 with human CNGA1 associations

Human Disease Mouse Models
      
IDs
 View 1 model
      
IDs
Click on a disease name to see all genes associated with that disease.

  • Mutations/Alleles
    1 with disease annotations
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    14 phenotypes from 1 allele in 1 genetic background
    22 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    32
  • GO References
    11
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    714
  • Tissues
    4
  • cDNA Data
    14
  • Literature Summary
    9
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 12788 NCBI Gene Model | MGI Sequence Detail 39057 C57BL/6J ±  kb
    transcript NM_007723 RefSeq | MGI Sequence Detail 2750 C57BL/6  
    polypeptide P29974 UniProt | EBI | MGI Sequence Detail 684 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 16
      cDNA 14
      Primer pair 2

      Microarray probesets 3
    Other
    Accession IDs
    less
    MGD-MRK-2038
    References
    more
    • Summaries
      All 72
      Developmental Gene Expression 9
      Diseases 1
      Gene Ontology 11
      Phenotypes 22
    • Earliest
      J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
    • Latest
      J:333119 Kandaswamy S, et al., Mutations within the cGMP-binding domain of CNGA1 causing autosomal recessive retinitis pigmentosa in human and animal model. Cell Death Discov. 2022 Sep 17;8(1):387
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/12/2024
    MGI 6.24     		The Jackson Laboratory