Glns-ps1 Pseudogene Detail

Summary

• Symbol
  Glns-ps1
• Name
  glutamine synthetase pseudogene 1

• Feature Type
  pseudogene
• IDs
  MGI:95740
  NCBI Gene: 14646
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:19670355-19671472 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 12.26 cM
• Mapping Data
  23 experiments

Strain
Comparison

• SNPs within 2kb
  149 from dbSNP Build 142
• Strain Annotations
  18
• PCR
  7

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_95740	pseudogene	Chr11:19670222-19671576 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0010609	pseudogene	Chr11:17165441-17168122 (+)
A/J	MGP_AJ_G0010601	pseudogene	Chr11:16606229-16607346 (+)
AKR/J	MGP_AKRJ_G0010563	pseudogene	Chr11:17183413-17184530 (+)
BALB/cJ	MGP_BALBcJ_G0010577	pseudogene	Chr11:16723689-16724806 (+)
C3H/HeJ	MGP_C3HHeJ_G0010497	pseudogene	Chr11:17106706-17107823 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0010849	pseudogene	Chr11:17964966-17966313 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009755	pseudogene	Chr12:11822853-11823973 (+)
CAST/EiJ	MGP_CASTEiJ_G0010322	pseudogene	Chr11:17060573-17061683 (+)
CBA/J	MGP_CBAJ_G0010469	pseudogene	Chr11:18673879-18674996 (+)
DBA/2J	MGP_DBA2J_G0010501	pseudogene	Chr11:16577095-16578212 (+)
FVB/NJ	MGP_FVBNJ_G0010517	pseudogene	Chr11:16317627-16319516 (+)
LP/J	MGP_LPJ_G0010589	pseudogene	Chr11:17341987-17343104 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010493	pseudogene	Chr11:19183112-19184229 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010826	pseudogene	Chr11:17267644-17268761 (+)
PWK/PhJ	MGP_PWKPhJ_G0010220	pseudogene	Chr11:16538181-16539399 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0010788	pseudogene	Chr18:36589568-36590541 (-)
WSB/EiJ	MGP_WSBEiJ_G0010379	pseudogene	Chr11:16943895-16945568 (+)

Homology

• Gene Tree
  Glns-ps1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Glns-ps1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000082100 (Evidence)
• NCBI Gene
  14646

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082100	Ensembl Gene Model | MGI Sequence Detail	1118	C57BL/6J
transcript	ENSMUST00000120291	Ensembl | MGI Sequence Detail	1118	Not Applicable

Protein
Information

• EC
  6.3.1.2

Molecular
Reagents

• All nucleic 10

  Genomic 9

  Primer pair 1

  
  

  Microarray probesets 1

Other
Accession IDs

MGD-MRK-10118

References

• Summaries
  All 34

  Phenotypes 3
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:68421 Jones BC, et al., Quantitative-trait loci analysis of cocaine-related behaviours and neurochemistry. Pharmacogenetics. 1999 Oct;9(5):607-17

TSS for Glns-ps1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr100479	Chr11:19670213-19670219 (+)	-139 bp