H2-T11-ps Pseudogene Detail

Summary

• Symbol
  H2-T11-ps
• Name
  histocompatibility 2, T region locus 11, pseudogene
• Synonyms
  C920025E04Rik, H-2T11

• Feature Type
  pseudogene
• IDs
  MGI:95943
  NCBI Gene: 667803
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:36420126-36422550 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 18.93 cM
• Mapping Data
  4 experiments

Strain
Comparison

• SNPs within 2kb
  37 from dbSNP Build 142
• Strain Annotations
  1
• RFLP
  2

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_95943	pseudogene	Chr17:36419469-36422581 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  H2-T11-ps
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Endonuclease-mediated
  1
• Targeted
  1
• Genomic Mutations
  2 involving H2-T11-ps
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  100
• Tissues
  95
• cDNA Data
  4
• Literature Summary
  4

Images

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  9
• RefSeq
  1

• Ensembl
  ENSMUSG00000073405 (Evidence)
• NCBI Gene
  667803

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000073405	Ensembl Gene Model | MGI Sequence Detail	2425	C57BL/6J
transcript	ENSMUST00000172538	Ensembl | MGI Sequence Detail	1067	Not Applicable

Molecular
Reagents

• All nucleic 20

  Genomic 11

  cDNA 5

  Primer pair 1

  Other 3

Other
Accession IDs

MGD-MRK-10426, MGD-MRK-10539, MGI:2442805

References

• Summaries
  All 22

  Developmental Gene Expression 4

  Phenotypes 2
• Earliest
  J:20104 Steinmetz M, et al., Clusters of genes encoding mouse transplantation antigens. Cell. 1982 Mar;28(3):489-98
• Latest
  J:261393 Fahl SP, et al., Role of a selecting ligand in shaping the murine gammadelta-TCR repertoire. Proc Natl Acad Sci U S A. 2018 Feb 20;115(8):1889-1894

TSS for H2-T11-ps:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr147953	Chr17:36422566-36422588 (-)	-27 bp