Hba-ps4 Pseudogene Detail

Summary

• Symbol
  Hba-ps4
• Name
  hemoglobin alpha, pseudogene 4
• Synonyms
  Hba-4ps, Hba-a4

• Feature Type
  pseudogene
• IDs
  MGI:96018
  NCBI Gene: 383229
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:26505337-26506035 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 13.11 cM
• Mapping Data
  83 experiments

Strain
Comparison

• SNPs within 2kb
  134 from dbSNP Build 142
• Strain Annotations
  19
• PCR
  1
• RFLP
  20

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_96018	pseudogene	Chr17:26505253-26506035 (-)
129S1/SvImJ	ENSMUSG00200053872	pseudogene	Chr17:21951013-21951711 (-)
A/J	ENSMUSG00195054424	pseudogene	Chr17:22978398-22979096 (-)
AKR/J	ENSMUSG00220053856	pseudogene	Chr17:22015005-22015703 (-)
BALB/cJ	ENSMUSG00180050927	pseudogene	Chr17:22249070-22249768 (-)
C3H/HeJ	ENSMUSG00175053724	pseudogene	Chr17:22007252-22007950 (-)
C57BL/6NJ	ENSMUSG00215054364	pseudogene	Chr17:22014963-22015661 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0037182	pseudogene	Chr17:22134874-22135589 (-)
CAST/EiJ	ENSTCUG00005051893	pseudogene	Chr17:22608524-22609222 (-)
CBA/J	ENSMUSG00210050973	pseudogene	Chr17:21846111-21846809 (-)
DBA/2J	ENSMUSG00185053739	pseudogene	Chr17:24066589-24067287 (-)
FVB/NJ	ENSMUSG00205053246	pseudogene	Chr17:22322343-22323041 (-)
JF1/MsJ	ENSUMUG00000057552	pseudogene	Chr17:23512581-23513279 (-)
LP/J	ENSMUSG00230055101	pseudogene	Chr17:25455523-25456221 (-)
NOD/ShiLtJ	ENSMUSG00190054111	pseudogene	Chr17:21955327-21956025 (-)
NZO/HlLtJ	ENSMUSG00225054845	pseudogene	Chr17:27385672-27386370 (-)
PWK/PhJ	ENSLUMG00010053301	pseudogene	Chr17:21428260-21428958 (-)
SPRET/EiJ	ENSMSPG00010049813	pseudogene	Chr17:22754626-22755328 (-)
WSB/EiJ	ENSIUOG00005051273	pseudogene	Chr17:22701378-22702077 (-)

Homology

• Gene Tree
  Hba-ps4
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  5
• Endonuclease-mediated
  2
• Gene trapped
  1
• Radiation induced
  2
• Genomic Mutations
  2 involving Hba-ps4
• Find Mice (IMSR)
  4 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1

• Ensembl
  ENSMUSG00000084893 (Evidence)
• NCBI Gene
  383229

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000084893	Ensembl Gene Model | MGI Sequence Detail	699	C57BL/6J
transcript	ENSMUST00000128900	Ensembl | MGI Sequence Detail	447	Not Applicable

Molecular
Reagents

• All nucleic 20

  Genomic 14

  Primer pair 2

  Other 4

Other
Accession IDs

MGD-MRK-10625, MGD-MRK-10628, MGD-MRK-10630, MGI:3649055

References

• Summaries
  All 68

  Phenotypes 6
• Earliest
  J:6586 Leder A, et al., Dispersion of alpha-like globin genes of the mouse to three different chromosomes. Nature. 1981 Sep 17-23;293(5829):196-200
• Latest
  J:194116 Flachs P, et al., Interallelic and intergenic incompatibilities of the Prdm9 (Hst1) gene in mouse hybrid sterility. PLoS Genet. 2012;8(11):e1003044

TSS for Hba-ps4:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr146934	Chr17:26506032-26506039 (-)	-1 bp