Hba-ps4 Pseudogene Detail

Summary

• Symbol
  Hba-ps4
• Name
  hemoglobin alpha, pseudogene 4
• Synonyms
  Hba-4ps, Hba-a4

• Feature Type
  pseudogene
• IDs
  MGI:96018
  NCBI Gene: 383229
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:26505337-26506035 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 13.11 cM
• Mapping Data
  83 experiments

Strain
Comparison

• SNPs within 2kb
  134 from dbSNP Build 142
• Strain Annotations
  18
• PCR
  1
• RFLP
  20

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_96018	pseudogene	Chr17:26505253-26506035 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0040144	pseudogene	Chr17:25447733-25448431 (-)
A/J	MGP_AJ_G0040137	pseudogene	Chr17:24681980-24682678 (-)
AKR/J	MGP_AKRJ_G0040062	pseudogene	Chr17:24794931-24795629 (-)
BALB/cJ	MGP_BALBcJ_G0040122	pseudogene	Chr17:24904223-24904921 (-)
C3H/HeJ	MGP_C3HHeJ_G0039771	pseudogene	Chr17:25185966-25186664 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0040713	pseudogene	Chr17:26501156-26501854 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0037182	pseudogene	Chr17:22134874-22135589 (-)
CAST/EiJ	MGP_CASTEiJ_G0038862	pseudogene	Chr17:25108298-25108996 (-)
CBA/J	MGP_CBAJ_G0039737	pseudogene	Chr17:27458040-27458738 (-)
DBA/2J	MGP_DBA2J_G0039934	pseudogene	Chr17:24274858-24275556 (-)
FVB/NJ	MGP_FVBNJ_G0039894	pseudogene	Chr17:24037784-24038482 (-)
LP/J	MGP_LPJ_G0039979	pseudogene	Chr17:25721193-25721891 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0039883	pseudogene	Chr17:27016941-27017639 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0040813	pseudogene	Chr17:25152255-25152953 (-)
PWK/PhJ	MGP_PWKPhJ_G0038554	pseudogene	Chr17:23048907-23049605 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0038258	pseudogene	Chr17:23209532-23210234 (-)
WSB/EiJ	MGP_WSBEiJ_G0039087	pseudogene	Chr17:25176400-25177099 (-)

Homology

• Gene Tree
  Hba-ps4
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Endonuclease-mediated
  1
• Gene trapped
  1
• Radiation induced
  2
• Genomic Mutations
  2 involving Hba-ps4
• Find Mice (IMSR)
  4 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000084893 (Evidence)
• NCBI Gene
  383229

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000084893	Ensembl Gene Model | MGI Sequence Detail	699	C57BL/6J
transcript	ENSMUST00000128900	Ensembl | MGI Sequence Detail	447	Not Applicable

Molecular
Reagents

• All nucleic 20

  Genomic 14

  Primer pair 2

  Other 4

Other
Accession IDs

MGD-MRK-10625, MGD-MRK-10628, MGD-MRK-10630, MGI:3649055

References

• Summaries
  All 67

  Phenotypes 6
• Earliest
  J:6586 Leder A, et al., Dispersion of alpha-like globin genes of the mouse to three different chromosomes. Nature. 1981 Sep 17-23;293(5829):196-200
• Latest
  J:194116 Flachs P, et al., Interallelic and intergenic incompatibilities of the Prdm9 (Hst1) gene in mouse hybrid sterility. PLoS Genet. 2012;8(11):e1003044

TSS for Hba-ps4:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr146934	Chr17:26506032-26506039 (-)	-1 bp