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Hmgn2 Gene Detail
Summary
  • Symbol
    Hmgn2
  • Name
    high mobility group nucleosomal binding domain 2
  • Synonyms
    Hmg17, HMG-17
  • Feature Type
    protein coding gene
  • IDs
    MGI:96136
    NCBI Gene: 15331
  • Alliance
    gene page
  • Transcription Start Sites
    7 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:133692050-133695302 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 4, 66.47 cM
  • Mapping Data
    4 experiments
Strain
Comparison
more
  • SNPs within 2kb
    138 from dbSNP Build 142
  • Strain Annotations
    18
  • RFLP
    1
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_96136
 protein coding gene Chr4:133692049-133695961 (-)
129S1/SvImJ MGP_129S1SvImJ_G0028906
 protein coding gene Chr4:136277493-136280713 (-)
A/J MGP_AJ_G0028865
 protein coding gene Chr4:130546365-130549520 (-)
AKR/J MGP_AKRJ_G0028817
 protein coding gene Chr4:134282417-134285725 (-)
BALB/cJ MGP_BALBcJ_G0028888
 protein coding gene Chr4:131190373-131193679 (-)
C3H/HeJ MGP_C3HHeJ_G0028602
 protein coding gene Chr4:134521183-134524472 (-)
C57BL/6NJ MGP_C57BL6NJ_G0029330
 protein coding gene Chr4:141194871-141198048 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0026601
 protein coding gene Chr4:123616399-123619615 (-)
CAST/EiJ MGP_CASTEiJ_G0028035
 protein coding gene Chr4:132638301-132641499 (-)
CBA/J MGP_CBAJ_G0028567
 protein coding gene Chr4:144884693-144887848 (-)
DBA/2J MGP_DBA2J_G0028716
 protein coding gene Chr4:130977905-130981049 (-)
FVB/NJ MGP_FVBNJ_G0028684
 protein coding gene Chr4:129862973-129866126 (-)
LP/J MGP_LPJ_G0028817
 protein coding gene Chr4:136370884-136374037 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0028709
 protein coding gene Chr4:149389518-149392727 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0029368
 protein coding gene Chr4:134719548-134722663 (-)
PWK/PhJ MGP_PWKPhJ_G0027755
 protein coding gene Chr4:127694163-127697597 (-)
SPRET/EiJ MGP_SPRETEiJ_G0027581
 protein coding gene Chr4:130553873-130557496 (-)
WSB/EiJ MGP_WSBEiJ_G0028114
 protein coding gene Chr4:134885509-134888808 (-)



Homology
more
  • Human Ortholog
    HMGN2, high mobility group nucleosomal binding domain 2
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    HMGN2, high mobility group nucleosomal binding domain 2
  • Synonyms
    HMG17
  • Links
    NCBI Gene ID: 3151
    neXtProt AC: NX_P05204
    UniProt: P05204

  • Chr Location
    1p36.11; chr1:26472440-26476642 (+)  GRCh38
Human Diseases
more
  • Diseases
    1 with Hmgn2 mouse models

Human Disease Mouse Models
      
IDs
 View 1 model
Click on a disease name to see all genes associated with that disease.

  • Mutations/Alleles
    1 with disease annotations
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    7 phenotypes from 3 alleles in 4 genetic backgrounds
    24 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Mice homozygous for a knock-out allele are viable.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    15
  • GO References
    7
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    967
  • Tissues
    174
  • cDNA Data
    23
  • Literature Summary
    21
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 15331 NCBI Gene Model | MGI Sequence Detail 3253 C57BL/6J ±  kb
    transcript NM_016957 RefSeq | MGI Sequence Detail 1254 ZRU/MplStud  
    polypeptide P09602 UniProt | EBI | MGI Sequence Detail 90 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 30
      Genomic 1
      cDNA 26
      Primer pair 3

      Microarray probesets 6
    Other
    Accession IDs
    less
    MGD-MRK-10772
    References
    more
    • Summaries
      All 73
      Developmental Gene Expression 21
      Diseases 1
      Gene Ontology 7
      Phenotypes 24
    • Earliest
      J:9474 Landsman D, et al., Mouse non-histone chromosomal protein HMG-17 cDNA sequence. Nucleic Acids Res. 1988 Nov 11;16(21):10386
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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    Funding Information
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    Send questions and comments to User Support.     		last database update
    12/10/2024
    MGI 6.24     		The Jackson Laboratory