Hsp25-ps1 Pseudogene Detail

Summary

• Symbol
  Hsp25-ps1
• Name
  heat shock protein 25, pseudogene 1
• Synonyms
  25kDa, ENSMUSG00000007852

• Feature Type
  pseudogene
• IDs
  MGI:96241
  NCBI Gene: 15508
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr13:45231974-45232603 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 21.73 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  112 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_96241	pseudogene	Chr13:45231846-45232660 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0036457	pseudogene	Chr5:140486153-140487462 (+)
A/J	MGP_AJ_G0036442	pseudogene	Chr5:134447440-134448737 (+)
AKR/J	MGP_AKRJ_G0036393	pseudogene	Chr5:138795104-138796415 (+)
BALB/cJ	MGP_BALBcJ_G0036434	pseudogene	Chr5:135799029-135800619 (+)
C3H/HeJ	MGP_C3HHeJ_G0036125	pseudogene	Chr5:139391301-139394237 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0036946	pseudogene	Chr5:145723192-145724990 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0035321	pseudogene	Chr5:138801817-138803128 (+)
CBA/J	MGP_CBAJ_G0036097	pseudogene	Chr5:151376660-151377957 (+)
DBA/2J	MGP_DBA2J_G0036273	pseudogene	Chr5:134341930-134343227 (+)
FVB/NJ	MGP_FVBNJ_G0036228	pseudogene	Chr5:133491486-133493705 (+)
LP/J	MGP_LPJ_G0036325	pseudogene	Chr5:140912437-140913843 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036229	pseudogene	Chr5:154393741-154396007 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037055	pseudogene	Chr5:138589018-138590315 (+)
PWK/PhJ	MGP_PWKPhJ_G0034965	pseudogene	Chr13:41939213-41939892 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0034834	pseudogene	Chr5:136137525-136138836 (+)
WSB/EiJ	MGP_WSBEiJ_G0035514	pseudogene	Chr5:139317912-139319621 (+)

Homology

• Gene Tree
  Hsp25-ps1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Gene trapped
  1
• Genomic Mutations
  1 involving Hsp25-ps1
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000078915 (Evidence)
• NCBI Gene
  15508

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000078915	Ensembl Gene Model | MGI Sequence Detail	630	C57BL/6J
transcript	ENSMUST00000109187	Ensembl | MGI Sequence Detail	630	Not Applicable

Molecular
Reagents

• All nucleic 3

  Genomic 2

  cDNA 1

Other
Accession IDs

MGD-MRK-10955, MGI:3642833

References

• Summaries
  All 13

  Phenotypes 5
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
• Latest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Hsp25-ps1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr122301	Chr13:45232659-45232667 (-)	-60 bp