About   Help   FAQ
Igkv13-84 Gene Detail
Summary
  • Symbol
    Igkv13-84
  • Name
    immunoglobulin kappa chain variable 13-84
  • Synonyms
    Igk-V33
  • Feature Type
    gene segment
  • IDs
    MGI:96514
    NCBI Gene: 692152
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:68916586-68917051 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, 31.34 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    169 from dbSNP Build 142
  • Strain Annotations
    12
  • RFLP
    1
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_96514
 gene segment Chr6:68916586-68917051 (+)
129S1/SvImJ MGP_129S1SvImJ_G0000140
 gene segment Chr6:69212398-69212863 (-)
A/J MGP_AJ_G0000133
 gene segment Chr6:66257186-66257651 (-)
AKR/J MGP_AKRJ_G0000135
 gene segment Chr6:68134129-68134594 (+)
BALB/cJ no annotation
C3H/HeJ MGP_C3HHeJ_G0000122
 gene segment Chr6:115927763-115928228 (-)
C57BL/6NJ no annotation
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0000137
 gene segment Chr6:68520191-68520653 (+)
CBA/J MGP_CBAJ_G0000133
 gene segment Chr6:73647502-73647967 (-)
DBA/2J no annotation
FVB/NJ MGP_FVBNJ_G0000125
 gene segment Chr6:65302498-65303073 (-)
LP/J MGP_LPJ_G0000143
 gene segment Chr6:69008795-69009260 (-)
NOD/ShiLtJ no annotation
NZO/HlLtJ no annotation
PWK/PhJ MGP_PWKPhJ_G0000117
 gene segment Chr6:64847933-64848398 (+)
SPRET/EiJ MGP_SPRETEiJ_G0000095
 gene segment Chr6:67594282-67594720 (-)
WSB/EiJ MGP_WSBEiJ_G0000135
 gene segment Chr6:68574749-68575214 (+)



Homology
more
  • Human Ortholog
    IGKV1-27, immunoglobulin kappa variable 1-27
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    IGKV1-27, immunoglobulin kappa variable 1-27
  • Synonyms
    A20, IGKV127
  • Links
    NCBI Gene ID: 28935
    UniProt: A0A075B6S5

  • Chr Location
    2p11.2; chr2:89213423-89213928 (-)  GRCh38
  • Human Ortholog
    IGKV1-33, immunoglobulin kappa variable 1-33
  • Synonyms
    IGKV133, O18
  • Links
    NCBI Gene ID: 28933

  • Chr Location
    2p11.2; chr2:89268001-89268506 (-)  GRCh38
  • Human Ortholog
    IGKV1D-33, immunoglobulin kappa variable 1D-33
  • Synonyms
    IGKV1D33, O8
  • Links
    NCBI Gene ID: 28896
    UniProt: P01593

  • Chr Location
    2p11.2; chr2:89913982-89914545 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    2
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    1
Sequences &
Gene Models
less
  • All Sequences
    22
  • RefSeq
    1
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 692152 NCBI Gene Model | MGI Sequence Detail 466 C57BL/6J ±  kb
transcript M35157 GenBank | ENA | DDBJ | MGI Sequence Detail 405 Not Specified  
polypeptide A0A140T8N3 UniProt | EBI | MGI Sequence Detail 115 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR007110 Immunoglobulin-like domain
    IPR036179 Immunoglobulin-like domain superfamily
    IPR013783 Immunoglobulin-like fold
    IPR003599 Immunoglobulin subtype
    IPR050150 Immunoglobulin Variable Light Chain
    IPR013106 Immunoglobulin V-set domain
Molecular
Reagents
less
  • All nucleic 17
    Genomic 7
    cDNA 2
    Primer pair 1
    Other 7
Other
Accession IDs
less
MGD-MRK-11317
References
more
  • Summaries
    All 13
    Gene Ontology 1
  • Earliest
    J:10769 D'Hoostelaere LA, et al., Characterization of new mouse V kappa groups. J Immunol. 1990 Oct 15;145(8):2706-12
  • Latest
    J:55926 Isobe T, et al., F. Genetic Strains Research Center. Analysis of the genetic structure of Pb hotspot in the Class II of MHC. Natl Inst Genet Jpn Annual Report. 1997;48:87-101
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory