Rbpj-ps3 Pseudogene Detail

Summary

• Symbol
  Rbpj-ps3
• Name
  recombination signal binding protein for immunoglobulin kappa J region, pseudogene 3
• Synonyms
  Igkrsbp-rs3, Rbpsuh-rs3

• Feature Type
  pseudogene
• IDs
  MGI:96525
  NCBI Gene: 19667
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:46506288-46507728 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 22.19 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  32 from dbSNP Build 142
• Strain Annotations
  6
• PCR
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_96525	pseudogene	Chr6:46506085-46507818 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0012646	pseudogene	Chr4:47808505-47899276 (+)
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0012235	pseudogene	Chr4:47400443-47401876 (+)
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0012587	pseudogene	Chr4:47867579-47995942 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0012941	pseudogene	Chr4:47415556-47536434 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0012257	pseudogene	Chr4:47341987-47440599 (+)

Homology

• Gene Tree
  Rbpj-ps3
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  10
• Gene trapped
  10
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  15 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  11
• RefSeq
  1

• Ensembl
  ENSMUSG00000079575 (Evidence)
• NCBI Gene
  19667

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000079575	Ensembl Gene Model | MGI Sequence Detail	1441	C57BL/6J
transcript	ENSMUST00000182751	Ensembl | MGI Sequence Detail	1441	Not Applicable

Molecular
Reagents

• All nucleic 2

  Genomic 1

  Primer pair 1

Other
Accession IDs

MGD-MRK-11330, MGI:5911354

References

• Summaries
  All 9

  Phenotypes 3
• Earliest
  J:2281 Kawaichi M, et al., Genomic organization of mouse J kappa recombination signal binding protein (RBP-J kappa) gene. J Biol Chem. 1992 Feb 25;267(6):4016-22
• Latest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Rbpj-ps3:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr60687	Chr6:46507120-46507137 (-)	599 bp