Ldha-ps2 Pseudogene Detail

Summary

• Symbol
  Ldha-ps2
• Name
  lactate dehydrogenase A, pseudogene 2
• Synonyms
  Ldh-1ps2

• Feature Type
  pseudogene
• IDs
  MGI:96761
  NCBI Gene: 16830
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:119191586-119192642 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 55.35 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  193 from dbSNP Build 142
• Strain Annotations
  12

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_96761	pseudogene	Chr4:119191077-119192739 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0012849	pseudogene	Chr4:120524506-120525913 (-)
A/J	MGP_AJ_G0012834	pseudogene	Chr4:115789924-115791545 (-)
AKR/J	MGP_AKRJ_G0012804	pseudogene	Chr4:118298619-118303057 (-)
BALB/cJ	MGP_BALBcJ_G0012813	pseudogene	Chr4:116416598-116417654 (-)
C3H/HeJ	MGP_C3HHeJ_G0012672	pseudogene	Chr4:119872141-119873197 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0013152	pseudogene	Chr4:125098893-125099949 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0012648	pseudogene	Chr4:128485216-128486272 (-)
DBA/2J	MGP_DBA2J_G0012709	pseudogene	Chr4:116381283-116382344 (-)
FVB/NJ	MGP_FVBNJ_G0012712	pseudogene	Chr4:114900148-114901853 (-)
LP/J	MGP_LPJ_G0012785	pseudogene	Chr4:120641677-120643201 (-)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0013164	pseudogene	Chr4:119376379-119378065 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Ldha-ps2
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Ldha-ps2
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  17
• RefSeq
  1

• Ensembl
  ENSMUSG00000083836 (Evidence)
• NCBI Gene
  16830

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083836	Ensembl Gene Model | MGI Sequence Detail	1057	C57BL/6J
transcript	ENSMUST00000118722	Ensembl | MGI Sequence Detail	1057	Not Applicable

Molecular
Reagents

• All nucleic 2

  Genomic 2

Other
Accession IDs

MGD-MRK-11764, MGD-MRK-11770

References

• Summaries
  All 10

  Phenotypes 3
• Earliest
  J:8625 Fukasawa KM, et al., Molecular nature of spontaneous mutations in mouse lactate dehydrogenase-A processed pseudogenes. Genetics. 1987 Jan;115(1):177-84

TSS for Ldha-ps2:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr43109	Chr4:119192740-119192741 (-)	-99 bp