Snord3b3 Gene Detail

Summary

• Symbol
  Snord3b3
• Name
  small nucleolar RNA, C/D box 3B3
• Synonyms
  Rnu3b-3, Rnu3b3

• Feature Type
  snoRNA gene
  BioType Conflict
  
• IDs
  MGI:97987
  NCBI Gene: 19860
• Member of
  Rnu3b cluster
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:87339453-87339667 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 52.10 cM, cytoband C-D
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  4 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_97987	snoRNA gene	Chr11:87339453-87339668 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Targeted
  1
• Genomic Mutations
  1 involving Snord3b3
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  8
• RefSeq
  1

• Ensembl
  ENSMUSG00000119648 (Evidence), ENSMUSG00002075453 (Evidence)
• NCBI Gene
  19860

Representative Sequences			Length	Strain/Species
genomic	19860	NCBI Gene Model | MGI Sequence Detail	215	C57BL/6J
transcript	NR_004416	RefSeq | MGI Sequence Detail	215	Not Specified

Molecular
Reagents

• All nucleic 4

  Genomic 1

  Other 3

Other
Accession IDs

MGD-MRK-13979, MGD-MRK-13995, MGI:6434253

References

• Summaries
  All 13

  Phenotypes 5
• Earliest
  J:9495 Mazan S, et al., Structure and organization of mouse U3B RNA functional genes. J Biol Chem. 1988 Dec 25;263(36):19461-7
• Latest
  J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52

TSS for Snord3b3:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr103925	Chr11:87338713-87338717 (+)	-738 bp