Snord3b4 Gene Detail

Summary

• Symbol
  Snord3b4
• Name
  small nucleolar RNA, C/D box 3B4
• Synonyms
  1810064A23Rik, Rnu3b-4, Rnu3b4

• Feature Type
  snoRNA gene
  BioType Conflict
  
• IDs
  MGI:97988
  NCBI Gene: 19861
• Member of
  Rnu3b cluster
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr11:87353112-87353329 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 52.11 cM, cytoband C-D
• Mapping Data
  4 experiments

Strain
Comparison

• SNPs within 2kb
  1 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_97988	snoRNA gene	Chr11:87353112-87353329 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Targeted
  1
• Genomic Mutations
  1 involving Snord3b4
• Find Mice (IMSR)
  0 strains or lines available

Expression

• cDNA Data
  2

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  10
• RefSeq
  1

• Ensembl
  ENSMUSG00000119851 (Evidence), ENSMUSG00002074955 (Evidence)
• NCBI Gene
  19861

Representative Sequences			Length	Strain/Species
genomic	19861	NCBI Gene Model | MGI Sequence Detail	218	C57BL/6J
transcript	NR_002843	RefSeq | MGI Sequence Detail	218	ZRU/MplStud

Molecular
Reagents

• All nucleic 7

  Genomic 1

  cDNA 3

  Other 3

  
  

  Microarray probesets 1

Other
Accession IDs

MGD-MRK-13980, MGD-MRK-13996, MGI:1925747, MGI:6434257

References

• Summaries
  All 18

  Phenotypes 5
• Earliest
  J:10885 Mazan S, et al., Organization of the gene family encoding mouse U3B RNA: role of gene conversions in its concerted evolution. Gene. 1990 Oct 15;94(2):263-72
• Latest
  J:174216 Terzian T, et al., Rpl27a mutation in the sooty foot ataxia mouse phenocopies high p53 mouse models. J Pathol. 2011 Aug;224(4):540-52