Rnu6-ps2 Pseudogene Detail

Summary

• Symbol
  Rnu6-ps2
• Name
  U6 small nuclear RNA, pseudogene 2
• Synonyms
  Gm24955

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:97991
  NCBI Gene: 19864
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:119385197-119385303 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  93 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_97991	pseudogene	Chr4:119385047-119385366 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Rnu6-ps2
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  4 involving Rnu6-ps2
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  6
• RefSeq
  1

• Ensembl
  ENSMUSG00000119323 (Evidence)
• NCBI Gene
  19864

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000119323	Ensembl Gene Model | MGI Sequence Detail	107	C57BL/6J
transcript	ENSMUST00000178059	Ensembl | MGI Sequence Detail	107	Not Applicable

Molecular
Reagents

• All nucleic 1

  Genomic 1

Other
Accession IDs

MGD-MRK-13999, MGI:5454732

References

• Summaries
  All 11

  Phenotypes 6
• Earliest
  J:6656 Ohshima Y, et al., Nucleotide sequences of mouse genomic loci including a gene or pseudogene for U6 (4.8S) nuclear RNA. Nucleic Acids Res. 1981 Oct 10;9(19):5145-58
• Latest
  J:148802 Boles MK, et al., A mouse chromosome 4 balancer ENU-mutagenesis screen isolates eleven lethal lines. BMC Genet. 2009;10:12