Rny1 Gene Detail

Summary

• Symbol
  Rny1
• Name
  RNA, Y1 small cytoplasmic, Ro-associated

• Feature Type
  scRNA gene
• IDs
  MGI:97995
  NCBI Gene: 19872
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr6:47765004-47765114 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 22.94 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  85 from dbSNP Build 142
• Strain Annotations
  17
• RFLP
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_97995	scRNA gene	Chr6:47765003-47765114 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0009775	unclassified non-coding RNA gene	Chr6:46693691-46693802 (-)
A/J	MGP_AJ_G0009761	unclassified non-coding RNA gene	Chr6:44541321-44541432 (-)
AKR/J	MGP_AKRJ_G0009745	unclassified non-coding RNA gene	Chr6:46082066-46082177 (-)
BALB/cJ	MGP_BALBcJ_G0009744	unclassified non-coding RNA gene	Chr6:44893884-44893995 (-)
C3H/HeJ	MGP_C3HHeJ_G0009677	unclassified non-coding RNA gene	Chr6:46117216-46117327 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0009987	unclassified non-coding RNA gene	Chr6:47713181-47713292 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0009496	unclassified non-coding RNA gene	Chr6:45846348-45846459 (-)
CBA/J	MGP_CBAJ_G0009650	unclassified non-coding RNA gene	Chr6:49731998-49732109 (-)
DBA/2J	MGP_DBA2J_G0009678	unclassified non-coding RNA gene	Chr6:44482884-44482995 (-)
FVB/NJ	MGP_FVBNJ_G0009694	unclassified non-coding RNA gene	Chr6:44120240-44120351 (-)
LP/J	MGP_LPJ_G0009771	unclassified non-coding RNA gene	Chr6:46593399-46593510 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0009663	unclassified non-coding RNA gene	Chr6:52610382-52610493 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0009960	unclassified non-coding RNA gene	Chr6:46003772-46003883 (-)
PWK/PhJ	MGP_PWKPhJ_G0009418	unclassified non-coding RNA gene	Chr6:44005276-44005387 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0009254	unclassified non-coding RNA gene	Chr6:45426000-45426111 (-)
WSB/EiJ	MGP_WSBEiJ_G0009597	unclassified non-coding RNA gene	Chr6:45998610-45998721 (-)

Homology

• Human Ortholog
  RNY1, RNA, Ro60-associated Y1

• Vertebrate Orthologs
  1

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  RNY1, RNA, Ro60-associated Y1
  
• Synonyms
  HY1, Y1
• Links
  HGNC:10242

  NCBI Gene ID: 6084

  
  
• Chr Location
  7q36.1; chr7:148987136-148987248 (-)  GRCh38

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• MGI Vertebrate Homology
  Rny1 stringent orthology
  1 human;1 mouse
  
• HCOP
  vertebrate homology predictions: RNY1
• Gene Tree
  Rny1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Endonuclease-mediated
  1
• Find Mice (IMSR)
  2 strains or lines available

Gene Ontology
(GO)
Classifications

• All GO Annotations
  2
• GO References
  1

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000065701 (Evidence)
• NCBI Gene
  19872

Representative Sequences			Length	Strain/Species
genomic	19872	NCBI Gene Model | MGI Sequence Detail	111	C57BL/6J
transcript	NR_004419	RefSeq | MGI Sequence Detail	111	C3H/An

Molecular
Reagents

• All nucleic 4

  Genomic 3

  cDNA 1

  
  

  Microarray probesets 1

Other
Accession IDs

MGD-MRK-14004

References

• Summaries
  All 10

  Gene Ontology 1

  Phenotypes 1
• Earliest
  J:17937 Crouch D, et al., The molecular cloning of a mouse Ro RNA, my1-like sequence. Nucleic Acids Res. 1989 Jun 26;17(12):4890
• Latest
  J:153140 Krude T, et al., Y RNA functions at the initiation step of mammalian chromosomal DNA replication. J Cell Sci. 2009 Aug 15;122(Pt 16):2836-45

TSS for Rny1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr60706	Chr6:47765112-47765122 (-)	-3 bp
Tssr60705	Chr6:47765042-47765074 (-)	56 bp