Trbv31 Gene Detail

Summary

• Symbol
  Trbv31
• Name
  T cell receptor beta, variable 31
• Synonyms
  Gm16809

• Feature Type
  gene segment
• IDs
  MGI:98588
  NCBI Gene: 269846
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr6:41534627-41535305 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 19.71 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  119 from dbSNP Build 142
• Strain Annotations
  18
• RFLP
  2

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_98588	gene segment	Chr6:41534627-41535386 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0002597	gene segment	Chr6:40066487-40067248 (-)
A/J	MGP_AJ_G0002568	gene segment	Chr6:38319127-38319888 (-)
AKR/J	MGP_AKRJ_G0002559	gene segment	Chr6:39558767-39559528 (-)
BALB/cJ	MGP_BALBcJ_G0002554	gene segment	Chr6:38530623-38531384 (-)
C3H/HeJ	MGP_C3HHeJ_G0002521	gene segment	Chr6:39588543-39589304 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0002695	gene segment	Chr6:41081429-41082190 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002264	gene segment	Chr6:36099171-36099939 (-)
CAST/EiJ	MGP_CASTEiJ_G0002506	gene segment	Chr6:39392294-39393056 (-)
CBA/J	MGP_CBAJ_G0002520	gene segment	Chr6:42790702-42791463 (-)
DBA/2J	MGP_DBA2J_G0002524	gene segment	Chr6:38154433-38155194 (-)
FVB/NJ	MGP_FVBNJ_G0002543	gene segment	Chr6:37877465-37878229 (-)
LP/J	MGP_LPJ_G0002603	gene segment	Chr6:40075895-40076656 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002527	gene segment	Chr6:45019551-45020312 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002705	gene segment	Chr6:39536724-39537485 (-)
PWK/PhJ	MGP_PWKPhJ_G0002466	gene segment	Chr6:37771114-37771878 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0002418	gene segment	Chr6:39151804-39152568 (-)
WSB/EiJ	MGP_WSBEiJ_G0002522	gene segment	Chr6:39447518-39448282 (-)

Homology

• Human Ortholog
  TRBV30, T cell receptor beta variable 30

• Vertebrate Orthologs
  1

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  TRBV30, T cell receptor beta variable 30
  
• Synonyms
  TCRBV20S1A1N2, TCRBV30S1
• Links
  HGNC:12214

  NCBI Gene ID: 28557

  UniProt: A0A0K0K1B3

  
  
• Chr Location
  7q34; chr7:142812586-142813399 (-)  GRCh38

---

• MGI Vertebrate Homology
  Trbv31 stringent orthology
  1 human;1 mouse
  
• HCOP
  vertebrate homology predictions: TRBV30
• Gene Tree
  Trbv31
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000076499 (Evidence)
• NCBI Gene
  269846

Representative Sequences			Length	Strain/Species
genomic	269846	NCBI Gene Model | MGI Sequence Detail	679	C57BL/6J
polypeptide	A2NU22	UniProt | EBI | MGI Sequence Detail	111	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR007110 Immunoglobulin-like domain
  IPR036179 Immunoglobulin-like domain superfamily
  IPR013783 Immunoglobulin-like fold
  IPR013106 Immunoglobulin V-set domain
  IPR050413 T cell receptor beta variable

Molecular
Reagents

• All nucleic 10

  Genomic 7

  cDNA 1

  Other 2

Other
Accession IDs

MGD-MRK-14880, MGI:4439733

References

• Summaries
  All 31
• Earliest
  J:7463 Chien YH, et al., Somatic recombination in a murine T-cell receptor gene. Nature. 1984 May 24-30;309(5966):322-6
• Latest
  J:121955 Baguma-Nibasheka M, et al., Microarray analysis of Myf5-/-:MyoD-/- hypoplastic mouse lungs reveals a profile of genes involved in pneumocyte differentiation. Histol Histopathol. 2007 May;22(5):483-95

TSS for Trbv31:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr60583	Chr6:41535325-41535348 (-)	-32 bp
Tssr60582	Chr6:41535292-41535305 (-)	6 bp
Tssr60581	Chr6:41534751-41534769 (-)	545 bp