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Trbv1 Gene Detail
Summary
  • Symbol
    Trbv1
  • Name
    T cell receptor beta, variable 1
  • Synonyms
    Gm6273
  • Feature Type
    gene segment
  • IDs
    MGI:98594
    NCBI Gene: 621968
  • Alliance
    gene page
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:40868230-40868819 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, 18.93 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    114 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_98594
 gene segment Chr6:40868163-40868819 (+)
129S1/SvImJ MGP_129S1SvImJ_G0002576
 gene segment Chr6:39366608-39367264 (+)
A/J MGP_AJ_G0002547
 gene segment Chr6:37642068-37642724 (+)
AKR/J MGP_AKRJ_G0002538
 gene segment Chr6:38848200-38848856 (+)
BALB/cJ MGP_BALBcJ_G0002533
 gene segment Chr6:37863813-37864469 (+)
C3H/HeJ MGP_C3HHeJ_G0002500
 gene segment Chr6:38858254-38858910 (+)
C57BL/6NJ MGP_C57BL6NJ_G0002674
 gene segment Chr6:40360737-40361393 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0002243
 gene segment Chr6:35480451-35481107 (+)
CAST/EiJ MGP_CASTEiJ_G0002485
 gene segment Chr6:38778736-38779392 (+)
CBA/J MGP_CBAJ_G0002499
 gene segment Chr6:41988796-41989452 (+)
DBA/2J MGP_DBA2J_G0002503
 gene segment Chr6:37462477-37463133 (+)
FVB/NJ MGP_FVBNJ_G0002531
 gene segment Chr6:37226317-37226973 (+)
LP/J MGP_LPJ_G0002582
 gene segment Chr6:39382242-39382898 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0002506
 gene segment Chr6:44213292-44213948 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0002684
 gene segment Chr6:38799123-38799779 (+)
PWK/PhJ MGP_PWKPhJ_G0002445
 gene segment Chr6:37115246-37115902 (+)
SPRET/EiJ MGP_SPRETEiJ_G0002397
 gene segment Chr6:38529034-38529690 (+)
WSB/EiJ MGP_WSBEiJ_G0002501
 gene segment Chr6:38752212-38752868 (+)



Homology
less
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    2
  • GO References
    2
Molecular Function

Biological Process

Cellular Component

Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    2
  • Literature Summary
    1
Sequences &
Gene Models
less
  • All Sequences
    27
  • RefSeq
    1
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 621968 NCBI Gene Model | MGI Sequence Detail 590 C57BL/6J ±  kb
transcript AK138971 GenBank | ENA | DDBJ | MGI Sequence Detail 975 C57BL/6J  
polypeptide A0A0B4J1G7 UniProt | EBI | MGI Sequence Detail 116 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • InterPro Domains
    IPR007110 Immunoglobulin-like domain
    IPR036179 Immunoglobulin-like domain superfamily
    IPR013783 Immunoglobulin-like fold
    IPR013106 Immunoglobulin V-set domain
    IPR051006 T cell receptor variable domain
Molecular
Reagents
less
  • All nucleic 10
    Genomic 5
    cDNA 4
    Other 1

    Microarray probesets 1
Other
Accession IDs
less
MGD-MRK-14886, MGI:3779582
References
more
  • Summaries
    All 19
    Developmental Gene Expression 1
    Gene Ontology 2
  • Earliest
    J:7628 Patten P, et al., Structure, expression and divergence of T-cell receptor beta-chain variable regions. Nature. 1984 Nov 1-7;312(5989):40-6
  • Latest
    J:180175 Patel O, et al., Vbeta2 natural killer T cell antigen receptor-mediated recognition of CD1d-glycolipid antigen. Proc Natl Acad Sci U S A. 2011 Nov 22;108(47):19007-12
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory