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Trbv29 Pseudogene Detail
Summary
  • Symbol
    Trbv29
  • Name
    T cell receptor beta variable 29
  • Synonyms
    Gm16649, Trbv28, Trbv28a, Vbeta7
Location &
Maps
more
  • Sequence Map
    Chr6:41248337-41248815 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, 19.38 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    169 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_98605
 pseudogenic gene segment Chr6:41248328-41248815 (+)
129S1/SvImJ MGP_129S1SvImJ_G0002595
 gene segment Chr6:39749417-39749904 (+)
A/J MGP_AJ_G0002566
 gene segment Chr6:38024696-38025183 (+)
AKR/J MGP_AKRJ_G0002557
 gene segment Chr6:39228659-39229146 (+)
BALB/cJ MGP_BALBcJ_G0002552
 gene segment Chr6:38240534-38241021 (+)
C3H/HeJ MGP_C3HHeJ_G0002519
 gene segment Chr6:39261050-39261537 (+)
C57BL/6NJ MGP_C57BL6NJ_G0002693
 gene segment Chr6:40725525-40726012 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0002262
 gene segment Chr6:35807128-35807615 (+)
CAST/EiJ MGP_CASTEiJ_G0002504
 gene segment Chr6:39158917-39159404 (+)
CBA/J MGP_CBAJ_G0002518
 gene segment Chr6:42402521-42403008 (+)
DBA/2J MGP_DBA2J_G0002522
 gene segment Chr6:37851643-37852130 (+)
FVB/NJ MGP_FVBNJ_G0002541
 gene segment Chr6:37587578-37588065 (+)
LP/J MGP_LPJ_G0002601
 gene segment Chr6:39757774-39758261 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0002525
 gene segment Chr6:44651540-44652027 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0002703
 gene segment Chr6:39207612-39208099 (+)
PWK/PhJ MGP_PWKPhJ_G0002464
 gene segment Chr6:37465992-37466479 (+)
SPRET/EiJ MGP_SPRETEiJ_G0002416
 gene segment Chr6:38912924-38913411 (+)
WSB/EiJ MGP_WSBEiJ_G0002520
 gene segment Chr6:39140258-39140745 (+)



Homology
more
  • Human Ortholog
    TRBV28, T cell receptor beta variable 28
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TRBV28, T cell receptor beta variable 28
  • Synonyms
    TCRBV28S1, TCRBV3S1
  • Links
    NCBI Gene ID: 28559
    UniProt: A0A5B6

  • Chr Location
    7q34; chr7:142720660-142721160 (+)  GRCh38
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    3
  • GO References
    2
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    1
  • Literature Summary
    1
Sequences &
Gene Models
less
  • All Sequences
    28
  • RefSeq
    1
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 100124698 NCBI Gene Model | MGI Sequence Detail 479 C57BL/6J ±  kb
transcript JX277345 GenBank | ENA | DDBJ | MGI Sequence Detail 93 ZRU/MplStud  
polypeptide A0A0G2LB96 UniProt | EBI | MGI Sequence Detail 114 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 8
    Genomic 6
    cDNA 2
Other
Accession IDs
less
MGD-MRK-14897, MGI:4439573, MGI:7538964, MGI:7611842
References
more
  • Summaries
    All 16
    Developmental Gene Expression 1
    Gene Ontology 2
  • Earliest
    J:7995 Barth RK, et al., The murine T-cell receptor uses a limited repertoire of expressed V beta gene segments. Nature. 1985 Aug 8-14;316(6028):517-23
  • Latest
    J:180175 Patel O, et al., Vbeta2 natural killer T cell antigen receptor-mediated recognition of CD1d-glycolipid antigen. Proc Natl Acad Sci U S A. 2011 Nov 22;108(47):19007-12
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory