Trgc3 Gene Detail

Summary

• Symbol
  Trgc3
• Name
  T cell receptor gamma, constant 3
• Synonyms
  Gm17356, Tcrg-C3

• Feature Type
  gene segment
• IDs
  MGI:98627
  NCBI Gene: 107575
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr13:19445055-19447567 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 6.89 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  243 from dbSNP Build 142
• Strain Annotations
  12
• RFLP
  2

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_98627	gene segment	Chr13:19445055-19447698 (+)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0002394	gene segment	Chr13:16149231-16167414 (+)
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	MGP_C3HHeJ_G0002367	gene segment	Chr13:16434558-16463384 (+)
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0002329	gene segment	Chr13:16163140-16165887 (+)
CBA/J	MGP_CBAJ_G0002359	gene segment	Chr13:17698924-17701550 (-)
DBA/2J	MGP_DBA2J_G0002365	gene segment	Chr13:15792059-15793938 (-)
FVB/NJ	MGP_FVBNJ_G0002377	gene segment	Chr13:15429428-15450837 (+)
LP/J	MGP_LPJ_G0002417	gene segment	Chr13:16664839-16666559 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0002345	gene segment	Chr13:18065665-18067892 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0002507	gene segment	Chr13:16176412-16180858 (+)
PWK/PhJ	MGP_PWKPhJ_G0002290	gene segment	Chr13:15873343-15875956 (-)
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0002359	gene segment	Chr13:16153363-16156108 (+)

Homology

• Human Ortholog
  TRGC1, T cell receptor gamma constant 1

• Vertebrate Orthologs
  2

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  TRGC1, T cell receptor gamma constant 1
  
• Synonyms
  C1, TCRG, TCRGC1
• Links
  HGNC:12275

  NCBI Gene ID: 6966

  UniProt: A2JGV3, P0CF51

  
  
• Chr Location
  7p14.1; chr7:38260088-38265678 (-)  GRCh38

---

• Human Ortholog
  TRGC2, T cell receptor gamma constant 2
  
• Synonyms
  TCRGC2, TRGC2(2X), TRGC2(3X)
• Links
  HGNC:12276

  NCBI Gene ID: 6967

  UniProt: P03986

  
  
• Chr Location
  7p14.1; chr7:38239580-38249572 (-)  GRCh38

---

• MGI Vertebrate Homology
  Trgc3 stringent orthology
  2 human;1 mouse
  
• HCOP
  vertebrate homology predictions: TRGC1, TRGC2
• Gene Tree
  Trgc3
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  APF
• Find Mice (IMSR)
  10 strains or lines available

Gene Ontology
(GO)
Classifications

• All GO Annotations
  1
• GO References
  1

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000091682 (Evidence)
• NCBI Gene
  107575

Representative Sequences			Length	Strain/Species
genomic	107575	NCBI Gene Model | MGI Sequence Detail	2513	C57BL/6J
polypeptide	A0A0G2JG12	UniProt | EBI | MGI Sequence Detail	148	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR003597 Immunoglobulin C1-set
  IPR007110 Immunoglobulin-like domain
  IPR036179 Immunoglobulin-like domain superfamily
  IPR013783 Immunoglobulin-like fold
  IPR051117 T cell receptor gamma variable/constant region

Molecular
Reagents

• All nucleic 4

  Genomic 3

  cDNA 1

Other
Accession IDs

MGD-MRK-14919, MGI:4936990, MGI:6331305

References

• Summaries
  All 10

  Gene Ontology 1
• Earliest
  J:7709 Hayday AC, et al., Structure, organization, and somatic rearrangement of T cell gamma genes. Cell. 1985 Feb;40(2):259-69
• Latest
  J:14571 Vernooij BT, et al., Organization of the murine T-cell receptor gamma locus. Genomics. 1993 Sep;17(3):566-74