GO Annotations Graph

• Symbol: Lig3
• Name: ligase III, DNA, ATP-dependent
• ID: MGI:109152

GO annotations

A table of the annotations represented in this image is provided below.

• Gray arrows indicate "is_a"; Blue arrows indicate "part_of"; Black arrows indicate "regulates"; Green arrows indicate "positively_regulates"; Red arrows indicate "negatively_regulates"
• Experimental annotations are indicated by darker-colored nodes; other annotations by lighter-colored nodes
• Clicking on any node links to the MGI GO browser and information on all genes annotated to the term or its subterms.
• Graph generated Fri Mar 10 20:53:16 2023.

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Gene Ontology Evidence Code Abbreviations:

Experimental:

EXP Inferred from experiment

HMP Inferred from high throughput mutant phenotype

HGI Inferred from high throughput genetic interaction

HDA Inferred from high throughput direct assay

HEP Inferred from high throughput expression pattern

IDA Inferred from direct assay

IEP Inferred from expression pattern

IGI Inferred from genetic interaction

IMP Inferred from mutant phenotype

IPI Inferred from physical interaction

Homology:

IAS Inferred from ancestral sequence

IBA Inferred from biological aspect of ancestor

IBD Inferred from biological aspect of descendant

IKR Inferred from key residues

IMR Inferred from missing residues

IRD Inferred from rapid divergence

ISA Inferred from sequence alignment

ISM Inferred from sequence model

ISO Inferred from sequence orthology

ISS Inferred from sequence or structural similarity

Automated:

IEA Inferred from electronic annotation

RCA Reviewed computational analysis

Other:

IC Inferred by curator

NAS Non-traceable author statement

ND No biological data available

TAS Traceable author statement

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Category	GO ID	Classification Term	Evidence	Reference
Molecular Function	GO:0005524	ATP binding	IEA	J:60000
Molecular Function	GO:0005524	ATP binding	IEA	J:72247
Molecular Function	GO:0003677	DNA binding	IEA	J:72247
Molecular Function	GO:0003910	DNA ligase (ATP) activity	ISO	J:164563
Molecular Function	GO:0003909	DNA ligase activity	ISO	J:164563
Molecular Function	GO:0003909	DNA ligase activity	ISO	J:164563
Molecular Function	GO:0003909	DNA ligase activity	ISO	J:155856
Molecular Function	GO:0016874	ligase activity	IEA	J:60000
Molecular Function	GO:0046872	metal ion binding	IEA	J:60000
Molecular Function	GO:0000166	nucleotide binding	IEA	J:60000
Molecular Function	GO:0008270	zinc ion binding	IEA	J:72247
Cellular Component	GO:0000794	condensed nuclear chromosome	IDA	J:37666
Cellular Component	GO:0070421	DNA ligase III-XRCC1 complex	ISO	J:164563
Cellular Component	GO:0070421	DNA ligase III-XRCC1 complex	IBA	J:265628
Cellular Component	GO:0005739	mitochondrion	IMP	J:170077
Cellular Component	GO:0005739	mitochondrion	ISO	J:164563
Cellular Component	GO:0005654	nucleoplasm	ISO	J:164563
Cellular Component	GO:0005634	nucleus	ISO	J:164563
Cellular Component	GO:0005634	nucleus	ISO	J:155856
Cellular Component	GO:0005634	nucleus	IBA	J:265628
Cellular Component	GO:0000795	synaptonemal complex	IDA	J:37666
Biological Process	GO:0006288	base-excision repair, DNA ligation	ISO	J:164563
Biological Process	GO:0006288	base-excision repair, DNA ligation	ISO	J:164563
Biological Process	GO:0006288	base-excision repair, DNA ligation	ISO	J:155856
Biological Process	GO:0006288	base-excision repair, DNA ligation	IBA	J:265628
Biological Process	GO:0007049	cell cycle	IEA	J:60000
Biological Process	GO:0051301	cell division	IEA	J:60000
Biological Process	GO:0071897	DNA biosynthetic process	IEA	J:72247
Biological Process	GO:0006974	DNA damage response	IEA	J:60000
Biological Process	GO:0006266	DNA ligation	ISO	J:164563
Biological Process	GO:0006310	DNA recombination	IEA	J:72247
Biological Process	GO:0006310	DNA recombination	IEA	J:60000
Biological Process	GO:0006281	DNA repair	IEA	J:60000
Biological Process	GO:0006281	DNA repair	IEA	J:72247
Biological Process	GO:0006260	DNA replication	IEA	J:60000
Biological Process	GO:0006302	double-strand break repair	ISO	J:164563
Biological Process	GO:0006302	double-strand break repair	IBA	J:265628
Biological Process	GO:0097681	double-strand break repair via alternative nonhomologous end joining	ISO	J:164563
Biological Process	GO:0097681	double-strand break repair via alternative nonhomologous end joining	IMP	J:173449
Biological Process	GO:0006303	double-strand break repair via nonhomologous end joining	IMP	J:173449
Biological Process	GO:0006273	lagging strand elongation	IBA	J:265628
Biological Process	GO:0043504	mitochondrial DNA repair	ISO	J:164563
Biological Process	GO:0043504	mitochondrial DNA repair	IMP	J:170077
Biological Process	GO:0043504	mitochondrial DNA repair	IMP	J:170076
Biological Process	GO:0007005	mitochondrion organization	ISO	J:164563
Biological Process	GO:0007005	mitochondrion organization	IMP	J:170077
Biological Process	GO:0045910	negative regulation of DNA recombination	IMP	J:109063
Biological Process	GO:0090298	negative regulation of mitochondrial DNA replication	ISO	J:164563