Ercc6 GO Annotations Graph

GO Annotations Graph

Symbol
Name
ID

Ercc6
excision repair cross-complementing rodent repair deficiency, complementation group 6
MGI:1100494

GO annotations (Text View) (Tabular View)

A table of the annotations represented in this image is provided below.

Gray arrows indicate "is_a"; Blue arrows indicate "part_of"; Black arrows indicate "regulates"; Green arrows indicate "positively_regulates"; Red arrows indicate "negatively_regulates"
Experimental annotations are indicated by darker-colored nodes; other annotations by lighter-colored nodes
Clicking on any node links to the MGI GO browser and information on all genes annotated to the term or its subterms.
Graph generated Fri Mar 10 20:53:16 2023.

Gene Ontology Evidence Code Abbreviations:

Experimental:

EXP: Inferred from experiment
HMP: Inferred from high throughput mutant phenotype
HGI: Inferred from high throughput genetic interaction
HDA: Inferred from high throughput direct assay
HEP: Inferred from high throughput expression pattern
IDA: Inferred from direct assay
IEP: Inferred from expression pattern
IGI: Inferred from genetic interaction
IMP: Inferred from mutant phenotype
IPI: Inferred from physical interaction

Homology:

IAS: Inferred from ancestral sequence
IBA: Inferred from biological aspect of ancestor
IBD: Inferred from biological aspect of descendant
IKR: Inferred from key residues
IMR: Inferred from missing residues
IRD: Inferred from rapid divergence
ISA: Inferred from sequence alignment
ISM: Inferred from sequence model
ISO: Inferred from sequence orthology
ISS: Inferred from sequence or structural similarity

Automated:

IEA: Inferred from electronic annotation
RCA: Reviewed computational analysis

Other:

IC: Inferred by curator
NAS: Non-traceable author statement
ND: No biological data available
TAS: Traceable author statement

Category	GO ID	Classification Term	Evidence	Reference
Molecular Function	GO:0005524	ATP binding	ISO	J:164563
Molecular Function	GO:0008094	ATP-dependent activity, acting on DNA	ISO	J:164563
Molecular Function	GO:0008094	ATP-dependent activity, acting on DNA	IBA	J:265628
Molecular Function	GO:0140658	ATP-dependent chromatin remodeler activity	ISO	J:164563
Molecular Function	GO:0003682	chromatin binding	ISO	J:164563
Molecular Function	GO:0003677	DNA binding	ISO	J:164563
Molecular Function	GO:0004386	helicase activity	IEA	J:60000
Molecular Function	GO:0016787	hydrolase activity	IEA	J:60000
Molecular Function	GO:0000166	nucleotide binding	IEA	J:60000
Molecular Function	GO:0030296	protein tyrosine kinase activator activity	ISO	J:73065
Molecular Function	GO:0070063	RNA polymerase binding	ISO	J:164563
Molecular Function	GO:0043565	sequence-specific DNA binding	ISO	J:164563
Cellular Component	GO:0110016	B-WICH complex	ISO	J:164563
Cellular Component	GO:0016604	nuclear body	ISO	J:164563
Cellular Component	GO:0005730	nucleolus	NAS	J:319968
Cellular Component	GO:0005730	nucleolus	ISO	J:73065
Cellular Component	GO:0005654	nucleoplasm	ISO	J:164563
Cellular Component	GO:0005654	nucleoplasm	ISO	J:164563
Cellular Component	GO:0005634	nucleus	IBA	J:265628
Cellular Component	GO:0005634	nucleus	ISO	J:73065
Cellular Component	GO:0090734	site of DNA damage	ISO	J:164563
Cellular Component	GO:0008023	transcription elongation factor complex	ISO	J:164563
Biological Process	GO:0006284	base-excision repair	ISO	J:164563
Biological Process	GO:0006338	chromatin remodeling	NAS	J:320057
Biological Process	GO:0000077	DNA damage checkpoint signaling	ISO	J:164563
Biological Process	GO:0006974	DNA damage response	IMP	J:70351
Biological Process	GO:0006974	DNA damage response	IMP	J:105008
Biological Process	GO:0042262	DNA protection	ISO	J:155856
Biological Process	GO:0006281	DNA repair	ISO	J:164563
Biological Process	GO:0006281	DNA repair	IGI	J:125672
Biological Process	GO:0006281	DNA repair	IGI	J:122881
Biological Process	GO:0006281	DNA repair	IGI	J:125672
Biological Process	GO:0006281	DNA repair	IMP	J:63469
Biological Process	GO:0006281	DNA repair	IGI	J:125672
Biological Process	GO:0097680	double-strand break repair via classical nonhomologous end joining	ISO	J:164563
Biological Process	GO:0008630	intrinsic apoptotic signaling pathway in response to DNA damage	IMP	J:65265
Biological Process	GO:0007254	JNK cascade	IMP	J:111758
Biological Process	GO:0035264	multicellular organism growth	IGI	J:181994
Biological Process	GO:0035264	multicellular organism growth	IGI	J:181994
Biological Process	GO:2001033	negative regulation of double-strand break repair via nonhomologous end joining	ISO	J:164563
Biological Process	GO:0007399	nervous system development	IEA	J:60000
Biological Process	GO:0022008	neurogenesis	ISO	J:164563
Biological Process	GO:0030182	neuron differentiation	ISO	J:164563
Biological Process	GO:0031175	neuron projection development	ISO	J:164563
Biological Process	GO:0045494	photoreceptor cell maintenance	IMP	J:118275
Biological Process	GO:0002230	positive regulation of defense response to virus by host	ISO	J:164563
Biological Process	GO:0045739	positive regulation of DNA repair	ISO	J:164563
Biological Process	GO:0045739	positive regulation of DNA repair	ISO	J:164563
Biological Process	GO:0032786	positive regulation of DNA-templated transcription, elongation	ISO	J:164563
Biological Process	GO:1905168	positive regulation of double-strand break repair via homologous recombination	ISO	J:164563
Biological Process	GO:0010628	positive regulation of gene expression	ISO	J:164563
Biological Process	GO:0035066	positive regulation of histone acetylation	NAS	J:319968
Biological Process	GO:0033141	positive regulation of peptidyl-serine phosphorylation of STAT protein	ISO	J:164563
Biological Process	GO:0045943	positive regulation of transcription by RNA polymerase I	NAS	J:319968
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	NAS	J:319696
Biological Process	GO:0045945	positive regulation of transcription by RNA polymerase III	ISO	J:164563
Biological Process	GO:0060261	positive regulation of transcription initiation by RNA polymerase II	IGI	J:181994
Biological Process	GO:0060261	positive regulation of transcription initiation by RNA polymerase II	IMP	J:181994
Biological Process	GO:0006290	pyrimidine dimer repair	IMP	J:40211
Biological Process	GO:0032784	regulation of DNA-templated transcription elongation	ISO	J:164563
Biological Process	GO:0034243	regulation of transcription elongation by RNA polymerase II	ISO	J:155856
Biological Process	GO:0010332	response to gamma radiation	IMP	J:92778
Biological Process	GO:0006979	response to oxidative stress	IMP	J:81189
Biological Process	GO:0006979	response to oxidative stress	ISO	J:73065
Biological Process	GO:0000303	response to superoxide	IMP	J:92778
Biological Process	GO:0009636	response to toxic substance	IMP	J:70351
Biological Process	GO:0009411	response to UV	IMP	J:92778
Biological Process	GO:0009411	response to UV	IMP	J:112137
Biological Process	GO:0010224	response to UV-B	IMP	J:62605
Biological Process	GO:0010224	response to UV-B	IMP	J:118275
Biological Process	GO:0010165	response to X-ray	IMP	J:105008
Biological Process	GO:0010165	response to X-ray	IMP	J:118275
Biological Process	GO:0000012	single strand break repair	ISO	J:164563
Biological Process	GO:0006362	transcription elongation by RNA polymerase I	IMP	J:198536
Biological Process	GO:0006283	transcription-coupled nucleotide-excision repair	ISO	J:164563
Biological Process	GO:0006283	transcription-coupled nucleotide-excision repair	ISO	J:155856
Biological Process	GO:0006283	transcription-coupled nucleotide-excision repair	IBA	J:265628
Biological Process	GO:0006283	transcription-coupled nucleotide-excision repair	IMP	J:40211
Biological Process	GO:0006283	transcription-coupled nucleotide-excision repair	IMP	J:81189

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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