GO Annotations Graph

• Symbol: Alyref
• Name: Aly/REF export factor
• ID: MGI:1341044

GO annotations

A table of the annotations represented in this image is provided below.

• Gray arrows indicate "is_a"; Blue arrows indicate "part_of"; Black arrows indicate "regulates"; Green arrows indicate "positively_regulates"; Red arrows indicate "negatively_regulates"
• Experimental annotations are indicated by darker-colored nodes; other annotations by lighter-colored nodes
• Clicking on any node links to the MGI GO browser and information on all genes annotated to the term or its subterms.
• Graph generated Fri Mar 10 20:53:16 2023.

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Gene Ontology Evidence Code Abbreviations:

Experimental:

EXP Inferred from experiment

HMP Inferred from high throughput mutant phenotype

HGI Inferred from high throughput genetic interaction

HDA Inferred from high throughput direct assay

HEP Inferred from high throughput expression pattern

IDA Inferred from direct assay

IEP Inferred from expression pattern

IGI Inferred from genetic interaction

IMP Inferred from mutant phenotype

IPI Inferred from physical interaction

Homology:

IAS Inferred from ancestral sequence

IBA Inferred from biological aspect of ancestor

IBD Inferred from biological aspect of descendant

IKR Inferred from key residues

IMR Inferred from missing residues

IRD Inferred from rapid divergence

ISA Inferred from sequence alignment

ISM Inferred from sequence model

ISO Inferred from sequence orthology

ISS Inferred from sequence or structural similarity

Automated:

IEA Inferred from electronic annotation

RCA Reviewed computational analysis

Other:

IC Inferred by curator

NAS Non-traceable author statement

ND No biological data available

TAS Traceable author statement

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Category	GO ID	Classification Term	Evidence	Reference
Molecular Function	GO:0062153	C5-methylcytidine-containing RNA binding	ISO	J:164563
Molecular Function	GO:0060090	molecular adaptor activity	EXP	J:326230
Molecular Function	GO:0003729	mRNA binding	IBA	J:265628
Molecular Function	GO:0003676	nucleic acid binding	IEA	J:72247
Molecular Function	GO:0003723	RNA binding	IDA	J:65157
Molecular Function	GO:0140691	RNA folding chaperone	EXP	J:326230
Molecular Function	GO:0003697	single-stranded DNA binding	IDA	J:65157
Cellular Component	GO:0071013	catalytic step 2 spliceosome	ISO	J:164563
Cellular Component	GO:0000781	chromosome, telomeric region	ISO	J:164563
Cellular Component	GO:0005737	cytoplasm	ISO	J:164563
Cellular Component	GO:0035145	exon-exon junction complex	ISO	J:164563
Cellular Component	GO:0005634	nucleus	ISO	J:164563
Cellular Component	GO:0005634	nucleus	IBA	J:265628
Cellular Component	GO:0005634	nucleus	TAS	J:65157
Cellular Component	GO:0005681	spliceosomal complex	IEA	J:60000
Cellular Component	GO:0000346	transcription export complex	ISO	J:164563
Biological Process	GO:0006406	mRNA export from nucleus	ISO	J:164563
Biological Process	GO:0006406	mRNA export from nucleus	IBA	J:265628
Biological Process	GO:0006397	mRNA processing	IEA	J:60000
Biological Process	GO:0051028	mRNA transport	IEA	J:60000
Biological Process	GO:0032786	positive regulation of DNA-templated transcription, elongation	ISO	J:164563
Biological Process	GO:0000018	regulation of DNA recombination	ISO	J:164563
Biological Process	GO:0031297	replication fork processing	ISO	J:164563
Biological Process	GO:0006405	RNA export from nucleus	ISO	J:164563
Biological Process	GO:0008380	RNA splicing	IEA	J:60000
Biological Process	GO:0046784	viral mRNA export from host cell nucleus	ISO	J:164563