GO Annotations Graph

• Symbol: Jmjd6
• Name: jumonji domain containing 6
• ID: MGI:1858910

GO annotations

A table of the annotations represented in this image is provided below.

• Gray arrows indicate "is_a"; Blue arrows indicate "part_of"; Black arrows indicate "regulates"; Green arrows indicate "positively_regulates"; Red arrows indicate "negatively_regulates"
• Experimental annotations are indicated by darker-colored nodes; other annotations by lighter-colored nodes
• Clicking on any node links to the MGI GO browser and information on all genes annotated to the term or its subterms.
• Graph generated Fri Mar 10 20:53:16 2023.

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Gene Ontology Evidence Code Abbreviations:

Experimental:

EXP Inferred from experiment

HMP Inferred from high throughput mutant phenotype

HGI Inferred from high throughput genetic interaction

HDA Inferred from high throughput direct assay

HEP Inferred from high throughput expression pattern

IDA Inferred from direct assay

IEP Inferred from expression pattern

IGI Inferred from genetic interaction

IMP Inferred from mutant phenotype

IPI Inferred from physical interaction

Homology:

IAS Inferred from ancestral sequence

IBA Inferred from biological aspect of ancestor

IBD Inferred from biological aspect of descendant

IKR Inferred from key residues

IMR Inferred from missing residues

IRD Inferred from rapid divergence

ISA Inferred from sequence alignment

ISM Inferred from sequence model

ISO Inferred from sequence orthology

ISS Inferred from sequence or structural similarity

Automated:

IEA Inferred from electronic annotation

RCA Reviewed computational analysis

Other:

IC Inferred by curator

NAS Non-traceable author statement

ND No biological data available

TAS Traceable author statement

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Category	GO ID	Classification Term	Evidence	Reference
Molecular Function	GO:0051213	dioxygenase activity	IEA	J:60000
Molecular Function	GO:0032452	histone demethylase activity	ISO	J:164563
Molecular Function	GO:0033746	histone H3R2 demethylase activity	ISO	J:164563
Molecular Function	GO:0033749	histone H3R3 demethylase activity	ISO	J:164563
Molecular Function	GO:0033749	histone H3R3 demethylase activity	IBA	J:265628
Molecular Function	GO:0042802	identical protein binding	ISO	J:164563
Molecular Function	GO:0042802	identical protein binding	IPI	J:166667
Molecular Function	GO:0005506	iron ion binding	ISO	J:164563
Molecular Function	GO:0046872	metal ion binding	IEA	J:60000
Molecular Function	GO:0035515	oxidative RNA demethylase activity	ISO	J:164563
Molecular Function	GO:0016491	oxidoreductase activity	IEA	J:60000
Molecular Function	GO:0106140	P-TEFb complex binding	ISO	J:164563
Molecular Function	GO:0106140	P-TEFb complex binding	IBA	J:265628
Molecular Function	GO:0070815	peptidyl-lysine 5-dioxygenase activity	ISO	J:164563
Molecular Function	GO:0005515	protein binding	IPI	J:169297
Molecular Function	GO:0005515	protein binding	IPI	J:216283
Molecular Function	GO:0140457	protein demethylase activity	ISO	J:164563
Molecular Function	GO:0003723	RNA binding	IDA	J:166667
Molecular Function	GO:0038023	signaling receptor activity	IDA	J:61894
Molecular Function	GO:0003727	single-stranded RNA binding	ISO	J:164563
Molecular Function	GO:0140537	transcription regulator activator activity	ISO	J:164563
Cellular Component	GO:0005737	cytoplasm	ISO	J:164563
Cellular Component	GO:0005737	cytoplasm	IBA	J:265628
Cellular Component	GO:0005829	cytosol	IDA	J:166667
Cellular Component	GO:0005730	nucleolus	ISO	J:164563
Cellular Component	GO:0005730	nucleolus	IDA	J:166667
Cellular Component	GO:0005654	nucleoplasm	ISO	J:164563
Cellular Component	GO:0005654	nucleoplasm	IDA	J:166667
Cellular Component	GO:0005634	nucleus	IDA	J:87758
Cellular Component	GO:0005634	nucleus	ISO	J:164563
Cellular Component	GO:0005634	nucleus	IBA	J:265628
Cellular Component	GO:0005634	nucleus	IDA	J:166667
Cellular Component	GO:0005886	plasma membrane	IDA	J:61894
Cellular Component	GO:0005886	plasma membrane	IDA	J:106377
Cellular Component	GO:1990904	ribonucleoprotein complex	IDA	J:166667
Biological Process	GO:0043277	apoptotic cell clearance	IMP	J:90288
Biological Process	GO:0043277	apoptotic cell clearance	IMP	J:90288
Biological Process	GO:0043277	apoptotic cell clearance	IMP	J:106377
Biological Process	GO:0001568	blood vessel development	IMP	J:102098
Biological Process	GO:0030154	cell differentiation	IEA	J:60000
Biological Process	GO:0007166	cell surface receptor signaling pathway	IDA	J:61894
Biological Process	GO:0006325	chromatin organization	IEA	J:60000
Biological Process	GO:0048821	erythrocyte development	IMP	J:90288
Biological Process	GO:0048821	erythrocyte development	IMP	J:98905
Biological Process	GO:0007507	heart development	IMP	J:102098
Biological Process	GO:0007507	heart development	IMP	J:102098
Biological Process	GO:0070078	histone H3-R2 demethylation	ISO	J:164563
Biological Process	GO:0070079	histone H4-R3 demethylation	ISO	J:164563
Biological Process	GO:0001822	kidney development	IMP	J:98905
Biological Process	GO:0030324	lung development	IMP	J:98905
Biological Process	GO:0030324	lung development	IMP	J:86771
Biological Process	GO:0042116	macrophage activation	IMP	J:98905
Biological Process	GO:0006397	mRNA processing	IEA	J:60000
Biological Process	GO:0007275	multicellular organism development	IEA	J:60000
Biological Process	GO:0035513	oxidative RNA demethylation	ISO	J:164563
Biological Process	GO:0018395	peptidyl-lysine hydroxylation to 5-hydroxy-L-lysine	ISO	J:164563
Biological Process	GO:0006909	phagocytosis	IBA	J:265628
Biological Process	GO:0045893	positive regulation of DNA-templated transcription	ISO	J:164563
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	ISO	J:164563
Biological Process	GO:0051260	protein homooligomerization	ISO	J:164563
Biological Process	GO:0043654	recognition of apoptotic cell	IDA	J:61894
Biological Process	GO:0043654	recognition of apoptotic cell	IMP	J:86771
Biological Process	GO:0048024	regulation of mRNA splicing, via spliceosome	ISO	J:164563
Biological Process	GO:0048024	regulation of mRNA splicing, via spliceosome	IMP	J:169297
Biological Process	GO:0060041	retina development in camera-type eye	IMP	J:98905
Biological Process	GO:0008380	RNA splicing	IEA	J:60000
Biological Process	GO:0002040	sprouting angiogenesis	IMP	J:169297
Biological Process	GO:0033077	T cell differentiation in thymus	IMP	J:90288