Smarca5 GO Annotations Graph

GO Annotations Graph

Symbol
Name
ID

Smarca5
SNF2 related chromatin remodeling ATPase 5
MGI:1935129

GO annotations (Text View) (Tabular View)

A table of the annotations represented in this image is provided below.

Gray arrows indicate "is_a"; Blue arrows indicate "part_of"; Black arrows indicate "regulates"; Green arrows indicate "positively_regulates"; Red arrows indicate "negatively_regulates"
Experimental annotations are indicated by darker-colored nodes; other annotations by lighter-colored nodes
Clicking on any node links to the MGI GO browser and information on all genes annotated to the term or its subterms.
Graph generated Fri Mar 10 20:53:16 2023.

Gene Ontology Evidence Code Abbreviations:

Experimental:

EXP: Inferred from experiment
HMP: Inferred from high throughput mutant phenotype
HGI: Inferred from high throughput genetic interaction
HDA: Inferred from high throughput direct assay
HEP: Inferred from high throughput expression pattern
IDA: Inferred from direct assay
IEP: Inferred from expression pattern
IGI: Inferred from genetic interaction
IMP: Inferred from mutant phenotype
IPI: Inferred from physical interaction

Homology:

IAS: Inferred from ancestral sequence
IBA: Inferred from biological aspect of ancestor
IBD: Inferred from biological aspect of descendant
IKR: Inferred from key residues
IMR: Inferred from missing residues
IRD: Inferred from rapid divergence
ISA: Inferred from sequence alignment
ISM: Inferred from sequence model
ISO: Inferred from sequence orthology
ISS: Inferred from sequence or structural similarity

Automated:

IEA: Inferred from electronic annotation
RCA: Reviewed computational analysis

Other:

IC: Inferred by curator
NAS: Non-traceable author statement
ND: No biological data available
TAS: Traceable author statement

Category	GO ID	Classification Term	Evidence	Reference
Molecular Function	GO:0005524	ATP binding	ISO	J:164563
Molecular Function	GO:0016887	ATP hydrolysis activity	ISO	J:164563
Molecular Function	GO:0008094	ATP-dependent activity, acting on DNA	IBA	J:265628
Molecular Function	GO:0140658	ATP-dependent chromatin remodeler activity	ISO	J:164563
Molecular Function	GO:0003677	DNA binding	ISO	J:164563
Molecular Function	GO:0003677	DNA binding	IBA	J:265628
Molecular Function	GO:0004386	helicase activity	IEA	J:60000
Molecular Function	GO:0042393	histone binding	ISO	J:164563
Molecular Function	GO:0140751	histone octamer slider activity	ISO	J:164563
Molecular Function	GO:0016787	hydrolase activity	IEA	J:60000
Molecular Function	GO:0031491	nucleosome binding	IEA	J:72247
Molecular Function	GO:0000166	nucleotide binding	IEA	J:60000
Molecular Function	GO:0005515	protein binding	IPI	J:100129
Molecular Function	GO:0005515	protein binding	IPI	J:108784
Molecular Function	GO:0005515	protein binding	IPI	J:76488
Molecular Function	GO:0005515	protein binding	IPI	J:143888
Cellular Component	GO:0016590	ACF complex	ISO	J:164563
Cellular Component	GO:0110016	B-WICH complex	ISO	J:164563
Cellular Component	GO:0008623	CHRAC	NAS	J:320088
Cellular Component	GO:0005677	chromatin silencing complex	IDA	J:100129
Cellular Component	GO:0005694	chromosome	IEA	J:60000
Cellular Component	GO:0000793	condensed chromosome	ISO	J:164563
Cellular Component	GO:0001650	fibrillar center	ISO	J:164563
Cellular Component	GO:0031010	ISWI-type complex	IPI	J:197015
Cellular Component	GO:0090536	NoRC complex	IPI	J:71381
Cellular Component	GO:0043596	nuclear replication fork	ISO	J:164563
Cellular Component	GO:0005730	nucleolus	NAS	J:111312
Cellular Component	GO:0005730	nucleolus	NAS	J:319968
Cellular Component	GO:0005654	nucleoplasm	ISO	J:164563
Cellular Component	GO:0005654	nucleoplasm	TAS	Reactome:R-MMU-573336
Cellular Component	GO:0005654	nucleoplasm	TAS	Reactome:R-MMU-573376
Cellular Component	GO:0005654	nucleoplasm	TAS	Reactome:R-MMU-573383
Cellular Component	GO:0005634	nucleus	ISO	J:164563
Cellular Component	GO:0005634	nucleus	IBA	J:265628
Cellular Component	GO:0005634	nucleus	IDA	J:76488
Cellular Component	GO:0005634	nucleus	IDA	J:111226
Cellular Component	GO:0016589	NURF complex	ISO	J:164563
Cellular Component	GO:0005721	pericentric heterochromatin	IDA	J:76488
Cellular Component	GO:0005721	pericentric heterochromatin	ISO	J:164563
Cellular Component	GO:0005721	pericentric heterochromatin	IDA	J:314097
Cellular Component	GO:0031213	RSF complex	ISO	J:164563
Cellular Component	GO:0035861	site of double-strand break	ISO	J:164563
Cellular Component	GO:0090535	WICH complex	ISO	J:164563
Biological Process	GO:1990830	cellular response to leukemia inhibitory factor	IEP	J:163558
Biological Process	GO:0006325	chromatin organization	IDA	J:76488
Biological Process	GO:0006338	chromatin remodeling	ISO	J:164563
Biological Process	GO:0006338	chromatin remodeling	NAS	J:320057
Biological Process	GO:0006338	chromatin remodeling	IDA	J:76488
Biological Process	GO:0006338	chromatin remodeling	IGI	J:71381
Biological Process	GO:0006281	DNA repair	ISO	J:164563
Biological Process	GO:0006352	DNA-templated transcription initiation	ISO	J:164563
Biological Process	GO:0009790	embryo development	IMP	J:111226
Biological Process	GO:0031507	heterochromatin formation	IDA	J:111312
Biological Process	GO:1905213	negative regulation of mitotic chromosome condensation	ISO	J:164563
Biological Process	GO:0016479	negative regulation of transcription by RNA polymerase I	IDA	J:79869
Biological Process	GO:0006334	nucleosome assembly	ISO	J:164563
Biological Process	GO:0045740	positive regulation of DNA replication	ISO	J:164563
Biological Process	GO:0045740	positive regulation of DNA replication	IMP	J:314097
Biological Process	GO:0045893	positive regulation of DNA-templated transcription	TAS	J:76488
Biological Process	GO:0045893	positive regulation of DNA-templated transcription	IMP	J:111226
Biological Process	GO:0035066	positive regulation of histone acetylation	NAS	J:319968
Biological Process	GO:0031065	positive regulation of histone deacetylation	IDA	J:150926
Biological Process	GO:0031062	positive regulation of histone methylation	IDA	J:162045
Biological Process	GO:0045943	positive regulation of transcription by RNA polymerase I	NAS	J:319968
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	NAS	J:319696
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	IBA	J:265628
Biological Process	GO:0045945	positive regulation of transcription by RNA polymerase III	ISO	J:164563
Biological Process	GO:0000183	rDNA heterochromatin formation	IDA	J:100129
Biological Process	GO:0000183	rDNA heterochromatin formation	IDA	J:150926
Biological Process	GO:0044030	regulation of DNA methylation	IDA	J:79869
Biological Process	GO:0006275	regulation of DNA replication	ISO	J:164563
Biological Process	GO:0006355	regulation of DNA-templated transcription	ISO	J:164563

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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