GO Annotations Graph

• Symbol: Phf5a
• Name: PHD finger protein 5A
• ID: MGI:2156864

GO annotations

A table of the annotations represented in this image is provided below.

• Gray arrows indicate "is_a"; Blue arrows indicate "part_of"; Black arrows indicate "regulates"; Green arrows indicate "positively_regulates"; Red arrows indicate "negatively_regulates"
• Experimental annotations are indicated by darker-colored nodes; other annotations by lighter-colored nodes
• Clicking on any node links to the MGI GO browser and information on all genes annotated to the term or its subterms.
• Graph generated Fri Mar 10 20:53:16 2023.

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Gene Ontology Evidence Code Abbreviations:

Experimental:

EXP Inferred from experiment

HMP Inferred from high throughput mutant phenotype

HGI Inferred from high throughput genetic interaction

HDA Inferred from high throughput direct assay

HEP Inferred from high throughput expression pattern

IDA Inferred from direct assay

IEP Inferred from expression pattern

IGI Inferred from genetic interaction

IMP Inferred from mutant phenotype

IPI Inferred from physical interaction

Homology:

IAS Inferred from ancestral sequence

IBA Inferred from biological aspect of ancestor

IBD Inferred from biological aspect of descendant

IKR Inferred from key residues

IMR Inferred from missing residues

IRD Inferred from rapid divergence

ISA Inferred from sequence alignment

ISM Inferred from sequence model

ISO Inferred from sequence orthology

ISS Inferred from sequence or structural similarity

Automated:

IEA Inferred from electronic annotation

RCA Reviewed computational analysis

Other:

IC Inferred by curator

NAS Non-traceable author statement

ND No biological data available

TAS Traceable author statement

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Category	GO ID	Classification Term	Evidence	Reference
Molecular Function	GO:0003677	DNA binding	IEA	J:60000
Molecular Function	GO:0046872	metal ion binding	IEA	J:60000
Molecular Function	GO:0005515	protein binding	IPI	J:283190
Molecular Function	GO:0005515	protein binding	IPI	J:283190
Molecular Function	GO:0005515	protein binding	IPI	J:166012
Molecular Function	GO:0003723	RNA binding	ISO	J:164563
Molecular Function	GO:0008270	zinc ion binding	ISO	J:164563
Cellular Component	GO:0016363	nuclear matrix	IDA	J:76650
Cellular Component	GO:0016607	nuclear speck	IDA	J:166012
Cellular Component	GO:0005654	nucleoplasm	ISO	J:164563
Cellular Component	GO:0005634	nucleus	ISO	J:164563
Cellular Component	GO:0005634	nucleus	IDA	J:283190
Cellular Component	GO:0071011	precatalytic spliceosome	IBA	J:265628
Cellular Component	GO:0005681	spliceosomal complex	IEA	J:60000
Cellular Component	GO:0005689	U12-type spliceosomal complex	ISO	J:164563
Cellular Component	GO:0005689	U12-type spliceosomal complex	IBA	J:265628
Cellular Component	GO:0005686	U2 snRNP	ISO	J:164563
Cellular Component	GO:0005686	U2 snRNP	IBA	J:265628
Cellular Component	GO:0071005	U2-type precatalytic spliceosome	ISO	J:164563
Cellular Component	GO:0005684	U2-type spliceosomal complex	ISO	J:164563
Biological Process	GO:0006397	mRNA processing	IEA	J:60000
Biological Process	GO:0000398	mRNA splicing, via spliceosome	ISO	J:164563
Biological Process	GO:0000398	mRNA splicing, via spliceosome	IBA	J:265628
Biological Process	GO:0045893	positive regulation of DNA-templated transcription	ISO	J:155856
Biological Process	GO:0008380	RNA splicing	IEA	J:60000
Biological Process	GO:0048863	stem cell differentiation	IEP	J:283190