GO Annotations Graph

• Symbol: Vps54
• Name: VPS54 GARP complex subunit
• ID: MGI:2178798

GO annotations

A table of the annotations represented in this image is provided below.

• Gray arrows indicate "is_a"; Blue arrows indicate "part_of"; Black arrows indicate "regulates"; Green arrows indicate "positively_regulates"; Red arrows indicate "negatively_regulates"
• Experimental annotations are indicated by darker-colored nodes; other annotations by lighter-colored nodes
• Clicking on any node links to the MGI GO browser and information on all genes annotated to the term or its subterms.
• Graph generated Fri Mar 10 20:53:16 2023.

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Gene Ontology Evidence Code Abbreviations:

Experimental:

EXP Inferred from experiment

HMP Inferred from high throughput mutant phenotype

HGI Inferred from high throughput genetic interaction

HDA Inferred from high throughput direct assay

HEP Inferred from high throughput expression pattern

IDA Inferred from direct assay

IEP Inferred from expression pattern

IGI Inferred from genetic interaction

IMP Inferred from mutant phenotype

IPI Inferred from physical interaction

Homology:

IAS Inferred from ancestral sequence

IBA Inferred from biological aspect of ancestor

IBD Inferred from biological aspect of descendant

IKR Inferred from key residues

IMR Inferred from missing residues

IRD Inferred from rapid divergence

ISA Inferred from sequence alignment

ISM Inferred from sequence model

ISO Inferred from sequence orthology

ISS Inferred from sequence or structural similarity

Automated:

IEA Inferred from electronic annotation

RCA Reviewed computational analysis

Other:

IC Inferred by curator

NAS Non-traceable author statement

ND No biological data available

TAS Traceable author statement

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Category	GO ID	Classification Term	Evidence	Reference
Molecular Function	GO:0019905	syntaxin binding	IBA	J:265628
Cellular Component	GO:0005737	cytoplasm	IDA	J:145882
Cellular Component	GO:0000938	GARP complex	IBA	J:265628
Cellular Component	GO:0000938	GARP complex	IDA	J:162305
Cellular Component	GO:0000938	GARP complex	ISO	J:225569
Cellular Component	GO:0000938	GARP complex	ISO	J:73065
Cellular Component	GO:0005794	Golgi apparatus	ISO	J:164563
Cellular Component	GO:0016020	membrane	ISO	J:155856
Cellular Component	GO:0005739	mitochondrion	IMP	J:186275
Cellular Component	GO:0005654	nucleoplasm	ISO	J:164563
Cellular Component	GO:0048471	perinuclear region of cytoplasm	ISO	J:164563
Cellular Component	GO:0005802	trans-Golgi network	ISO	J:164563
Cellular Component	GO:0005802	trans-Golgi network	ISO	J:225569
Biological Process	GO:0006309	apoptotic DNA fragmentation	IMP	J:108043
Biological Process	GO:0048708	astrocyte differentiation	IMP	J:265067
Biological Process	GO:0071393	cellular response to progesterone stimulus	IMP	J:186275
Biological Process	GO:0010467	gene expression	IMP	J:115319
Biological Process	GO:0010467	gene expression	IMP	J:120710
Biological Process	GO:0010467	gene expression	IMP	J:122494
Biological Process	GO:0010467	gene expression	IMP	J:133832
Biological Process	GO:0010467	gene expression	IMP	J:145882
Biological Process	GO:0010467	gene expression	IMP	J:171954
Biological Process	GO:0010467	gene expression	IMP	J:186275
Biological Process	GO:0010467	gene expression	IMP	J:203704
Biological Process	GO:0010467	gene expression	IMP	J:254706
Biological Process	GO:0010467	gene expression	IMP	J:260941
Biological Process	GO:0010467	gene expression	IMP	J:265067
Biological Process	GO:0006896	Golgi to vacuole transport	IBA	J:265628
Biological Process	GO:0048872	homeostasis of number of cells	IMP	J:260941
Biological Process	GO:0048873	homeostasis of number of cells within a tissue	IMP	J:209863
Biological Process	GO:0048873	homeostasis of number of cells within a tissue	IMP	J:35489
Biological Process	GO:0001701	in utero embryonic development	IMP	J:104824
Biological Process	GO:0006874	intracellular calcium ion homeostasis	IMP	J:203704
Biological Process	GO:0051938	L-glutamate import	IMP	J:163861
Biological Process	GO:0060173	limb development	IMP	J:260941
Biological Process	GO:0060173	limb development	IMP	J:289825
Biological Process	GO:0035108	limb morphogenesis	IMP	J:260941
Biological Process	GO:0007041	lysosomal transport	ISO	J:225569
Biological Process	GO:0014004	microglia differentiation	IMP	J:265067
Biological Process	GO:0007005	mitochondrion organization	IMP	J:186275
Biological Process	GO:0061744	motor behavior	IMP	J:265067
Biological Process	GO:0097049	motor neuron apoptotic process	IMP	J:133832
Biological Process	GO:0097049	motor neuron apoptotic process	IMP	J:265067
Biological Process	GO:0050881	musculoskeletal movement	IMP	J:35489
Biological Process	GO:2000672	negative regulation of motor neuron apoptotic process	IMP	J:104824
Biological Process	GO:0097719	neural tissue regeneration	IMP	J:260941
Biological Process	GO:0060052	neurofilament cytoskeleton organization	IMP	J:71188
Biological Process	GO:0150076	neuroinflammatory response	IMP	J:265067
Biological Process	GO:0007274	neuromuscular synaptic transmission	IMP	J:209863
Biological Process	GO:0051402	neuron apoptotic process	IMP	J:163861
Biological Process	GO:0051402	neuron apoptotic process	IMP	J:289825
Biological Process	GO:0048812	neuron projection morphogenesis	IMP	J:163861
Biological Process	GO:0035128	post-embryonic forelimb morphogenesis	IMP	J:108043
Biological Process	GO:0008104	protein localization	IMP	J:145882
Biological Process	GO:0034394	protein localization to cell surface	IMP	J:262455
Biological Process	GO:0045047	protein targeting to ER	IMP	J:254706
Biological Process	GO:0045047	protein targeting to ER	IMP	J:289825
Biological Process	GO:0006622	protein targeting to lysosome	IMP	J:254706
Biological Process	GO:0006622	protein targeting to lysosome	IMP	J:289825
Biological Process	GO:0006623	protein targeting to vacuole	IMP	J:262455
Biological Process	GO:0015031	protein transport	IEA	J:60000
Biological Process	GO:0040008	regulation of growth	IMP	J:35489
Biological Process	GO:0022904	respiratory electron transport chain	IMP	J:186275
Biological Process	GO:0046677	response to antibiotic	IMP	J:289825
Biological Process	GO:0051592	response to calcium ion	IMP	J:115319
Biological Process	GO:0042147	retrograde transport, endosome to Golgi	IBA	J:265628
Biological Process	GO:0042147	retrograde transport, endosome to Golgi	ISO	J:225569
Biological Process	GO:0007519	skeletal muscle tissue development	IMP	J:108043
Biological Process	GO:0048630	skeletal muscle tissue growth	IMP	J:203704
Biological Process	GO:0048515	spermatid differentiation	IMP	J:104824
Biological Process	GO:0030149	sphingolipid catabolic process	IMP	J:289825
Biological Process	GO:0006941	striated muscle contraction	IMP	J:115319
Biological Process	GO:0006941	striated muscle contraction	IMP	J:203704
Biological Process	GO:0051932	synaptic transmission, GABAergic	IMP	J:181019
Biological Process	GO:0035249	synaptic transmission, glutamatergic	IMP	J:265067
Biological Process	GO:0070493	thrombin-activated receptor signaling pathway	IMP	J:133832
Biological Process	GO:0010992	ubiquitin recycling	IMP	J:145882
Biological Process	GO:0007033	vacuole organization	IMP	J:108043
Biological Process	GO:0090119	vesicle-mediated cholesterol transport	IMP	J:254706