GO Annotations Graph

• Symbol: Vps39
• Name: VPS39 HOPS complex subunit
• ID: MGI:2443189

GO annotations

A table of the annotations represented in this image is provided below.

• Gray arrows indicate "is_a"; Blue arrows indicate "part_of"; Black arrows indicate "regulates"; Green arrows indicate "positively_regulates"; Red arrows indicate "negatively_regulates"
• Experimental annotations are indicated by darker-colored nodes; other annotations by lighter-colored nodes
• Clicking on any node links to the MGI GO browser and information on all genes annotated to the term or its subterms.
• Graph generated Fri Mar 10 20:53:16 2023.

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Gene Ontology Evidence Code Abbreviations:

Experimental:

EXP Inferred from experiment

HMP Inferred from high throughput mutant phenotype

HGI Inferred from high throughput genetic interaction

HDA Inferred from high throughput direct assay

HEP Inferred from high throughput expression pattern

IDA Inferred from direct assay

IEP Inferred from expression pattern

IGI Inferred from genetic interaction

IMP Inferred from mutant phenotype

IPI Inferred from physical interaction

Homology:

IAS Inferred from ancestral sequence

IBA Inferred from biological aspect of ancestor

IBD Inferred from biological aspect of descendant

IKR Inferred from key residues

IMR Inferred from missing residues

IRD Inferred from rapid divergence

ISA Inferred from sequence alignment

ISM Inferred from sequence model

ISO Inferred from sequence orthology

ISS Inferred from sequence or structural similarity

Automated:

IEA Inferred from electronic annotation

RCA Reviewed computational analysis

Other:

IC Inferred by curator

NAS Non-traceable author statement

ND No biological data available

TAS Traceable author statement

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Category	GO ID	Classification Term	Evidence	Reference
Molecular Function	GO:0005515	protein binding	IPI	J:90042
Cellular Component	GO:0030123	AP-3 adaptor complex	IDA	J:222677
Cellular Component	GO:0005737	cytoplasm	IBA	J:265628
Cellular Component	GO:0005768	endosome	IEA	J:60000
Cellular Component	GO:0030897	HOPS complex	ISO	J:164563
Cellular Component	GO:0005770	late endosome	ISO	J:164563
Cellular Component	GO:0031902	late endosome membrane	ISO	J:164563
Cellular Component	GO:1902501	lysosomal HOPS complex	ISO	J:164563
Cellular Component	GO:0005765	lysosomal membrane	ISO	J:164563
Cellular Component	GO:0005764	lysosome	IEA	J:60000
Cellular Component	GO:0016020	membrane	IBA	J:265628
Biological Process	GO:0061909	autophagosome-lysosome fusion	ISO	J:164563
Biological Process	GO:0006914	autophagy	ISO	J:164563
Biological Process	GO:0006914	autophagy	IBA	J:265628
Biological Process	GO:0032456	endocytic recycling	ISO	J:164563
Biological Process	GO:0034058	endosomal vesicle fusion	ISO	J:164563
Biological Process	GO:0034058	endosomal vesicle fusion	IBA	J:265628
Biological Process	GO:0008333	endosome to lysosome transport	ISO	J:164563
Biological Process	GO:0006886	intracellular protein transport	IEA	J:72247
Biological Process	GO:1902774	late endosome to lysosome transport	ISO	J:164563
Biological Process	GO:0015031	protein transport	IEA	J:60000
Biological Process	GO:0016192	vesicle-mediated transport	IEA	J:72247