Satb2 GO Annotations Graph

GO Annotations Graph

Symbol
Name
ID

Satb2
special AT-rich sequence binding protein 2
MGI:2679336

GO annotations (Text View) (Tabular View)

A table of the annotations represented in this image is provided below.

Gray arrows indicate "is_a"; Blue arrows indicate "part_of"; Black arrows indicate "regulates"; Green arrows indicate "positively_regulates"; Red arrows indicate "negatively_regulates"
Experimental annotations are indicated by darker-colored nodes; other annotations by lighter-colored nodes
Clicking on any node links to the MGI GO browser and information on all genes annotated to the term or its subterms.
Graph generated Fri Mar 10 20:53:16 2023.

Gene Ontology Evidence Code Abbreviations:

Experimental:

EXP: Inferred from experiment
HMP: Inferred from high throughput mutant phenotype
HGI: Inferred from high throughput genetic interaction
HDA: Inferred from high throughput direct assay
HEP: Inferred from high throughput expression pattern
IDA: Inferred from direct assay
IEP: Inferred from expression pattern
IGI: Inferred from genetic interaction
IMP: Inferred from mutant phenotype
IPI: Inferred from physical interaction

Homology:

IAS: Inferred from ancestral sequence
IBA: Inferred from biological aspect of ancestor
IBD: Inferred from biological aspect of descendant
IKR: Inferred from key residues
IMR: Inferred from missing residues
IRD: Inferred from rapid divergence
ISA: Inferred from sequence alignment
ISM: Inferred from sequence model
ISO: Inferred from sequence orthology
ISS: Inferred from sequence or structural similarity

Automated:

IEA: Inferred from electronic annotation
RCA: Reviewed computational analysis

Other:

IC: Inferred by curator
NAS: Non-traceable author statement
ND: No biological data available
TAS: Traceable author statement

Category	GO ID	Classification Term	Evidence	Reference
Molecular Function	GO:0003682	chromatin binding	IDA	J:115876
Molecular Function	GO:0003682	chromatin binding	IDA	J:192361
Molecular Function	GO:0003677	DNA binding	IEA	J:60000
Molecular Function	GO:0003677	DNA binding	IEA	J:72247
Molecular Function	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific	ISO	J:164563
Molecular Function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific	IBA	J:265628
Molecular Function	GO:0042826	histone deacetylase binding	ISO	J:155856
Molecular Function	GO:0005515	protein binding	IPI	J:272747
Molecular Function	GO:0005515	protein binding	IPI	J:182157
Molecular Function	GO:0005515	protein binding	IPI	J:115876
Molecular Function	GO:0005515	protein binding	IPI	J:115876
Molecular Function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	IBA	J:265628
Molecular Function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	IDA	J:135318
Molecular Function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	IDA	J:99491
Molecular Function	GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding	IDA	J:115876
Molecular Function	GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding	ISO	J:164563
Molecular Function	GO:0043565	sequence-specific DNA binding	IGI	J:115876
Molecular Function	GO:0043565	sequence-specific DNA binding	IGI	J:115876
Cellular Component	GO:0000785	chromatin	IC	J:99491
Cellular Component	GO:0000118	histone deacetylase complex	IDA	J:135318
Cellular Component	GO:0005654	nucleoplasm	ISO	J:164563
Cellular Component	GO:0005654	nucleoplasm	TAS	Reactome:R-MMU-8985270
Cellular Component	GO:0005634	nucleus	ISO	J:135318
Cellular Component	GO:0005634	nucleus	IDA	J:99491
Cellular Component	GO:0005634	nucleus	IDA	J:99491
Cellular Component	GO:0005634	nucleus	IDA	J:99491
Cellular Component	GO:0005634	nucleus	IDA	J:99491
Cellular Component	GO:0005634	nucleus	IDA	J:99491
Cellular Component	GO:0005634	nucleus	IDA	J:99491
Cellular Component	GO:0005634	nucleus	IDA	J:99491
Cellular Component	GO:0005634	nucleus	IDA	J:99491
Cellular Component	GO:0005667	transcription regulator complex	IDA	J:115876
Biological Process	GO:0051216	cartilage development	IMP	J:115876
Biological Process	GO:0071310	cellular response to organic substance	IDA	J:138764
Biological Process	GO:0006325	chromatin organization	IEA	J:60000
Biological Process	GO:0006338	chromatin remodeling	IBA	J:265628
Biological Process	GO:0006338	chromatin remodeling	IDA	J:135318
Biological Process	GO:0009880	embryonic pattern specification	IMP	J:115876
Biological Process	GO:0009880	embryonic pattern specification	IMP	J:115876
Biological Process	GO:0009880	embryonic pattern specification	IMP	J:115876
Biological Process	GO:0009880	embryonic pattern specification	IMP	J:115876
Biological Process	GO:0009880	embryonic pattern specification	IMP	J:115876
Biological Process	GO:0009880	embryonic pattern specification	IMP	J:115876
Biological Process	GO:0048704	embryonic skeletal system morphogenesis	IMP	J:116770
Biological Process	GO:0048704	embryonic skeletal system morphogenesis	IMP	J:115876
Biological Process	GO:0007275	multicellular organism development	IEA	J:60000
Biological Process	GO:0000122	negative regulation of transcription by RNA polymerase II	IMP	J:115876
Biological Process	GO:0001764	neuron migration	IMP	J:135318
Biological Process	GO:0002076	osteoblast development	IMP	J:115876
Biological Process	GO:0002076	osteoblast development	IGI	J:115876
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	ISO	J:164563
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	IDA	J:115876
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	IGI	J:115876
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	IGI	J:115876
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	IGI	J:115876
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	IGI	J:115876
Biological Process	GO:0010468	regulation of gene expression	IMP	J:135318
Biological Process	GO:0010468	regulation of gene expression	IMP	J:135318
Biological Process	GO:0010468	regulation of gene expression	IMP	J:135318
Biological Process	GO:0006357	regulation of transcription by RNA polymerase II	IBA	J:265628
Biological Process	GO:0060021	roof of mouth development	IMP	J:116770
Biological Process	GO:0060021	roof of mouth development	IMP	J:115876

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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