Cdx2 GO Annotations Graph

GO Annotations Graph

Symbol
Name
ID

Cdx2
caudal type homeobox 2
MGI:88361

GO annotations (Text View) (Tabular View)

A table of the annotations represented in this image is provided below.

Gray arrows indicate "is_a"; Blue arrows indicate "part_of"; Black arrows indicate "regulates"; Green arrows indicate "positively_regulates"; Red arrows indicate "negatively_regulates"
Experimental annotations are indicated by darker-colored nodes; other annotations by lighter-colored nodes
Clicking on any node links to the MGI GO browser and information on all genes annotated to the term or its subterms.
Graph generated Fri Mar 10 20:53:16 2023.

Gene Ontology Evidence Code Abbreviations:

Experimental:

EXP: Inferred from experiment
HMP: Inferred from high throughput mutant phenotype
HGI: Inferred from high throughput genetic interaction
HDA: Inferred from high throughput direct assay
HEP: Inferred from high throughput expression pattern
IDA: Inferred from direct assay
IEP: Inferred from expression pattern
IGI: Inferred from genetic interaction
IMP: Inferred from mutant phenotype
IPI: Inferred from physical interaction

Homology:

IAS: Inferred from ancestral sequence
IBA: Inferred from biological aspect of ancestor
IBD: Inferred from biological aspect of descendant
IKR: Inferred from key residues
IMR: Inferred from missing residues
IRD: Inferred from rapid divergence
ISA: Inferred from sequence alignment
ISM: Inferred from sequence model
ISO: Inferred from sequence orthology
ISS: Inferred from sequence or structural similarity

Automated:

IEA: Inferred from electronic annotation
RCA: Reviewed computational analysis

Other:

IC: Inferred by curator
NAS: Non-traceable author statement
ND: No biological data available
TAS: Traceable author statement

Category	GO ID	Classification Term	Evidence	Reference
Molecular Function	GO:0003677	DNA binding	IEA	J:60000
Molecular Function	GO:0003677	DNA binding	IEA	J:72247
Molecular Function	GO:0003700	DNA-binding transcription factor activity	ISO	J:155856
Molecular Function	GO:0003700	DNA-binding transcription factor activity	IDA	J:179218
Molecular Function	GO:0003700	DNA-binding transcription factor activity	IBA	J:265628
Molecular Function	GO:0003700	DNA-binding transcription factor activity	IDA	J:104800
Molecular Function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific	IEA	J:72247
Molecular Function	GO:0001227	DNA-binding transcription repressor activity, RNA polymerase II-specific	ISO	J:164563
Molecular Function	GO:0003690	double-stranded DNA binding	ISO	J:155856
Molecular Function	GO:0008327	methyl-CpG binding	ISO	J:164563
Molecular Function	GO:0005515	protein binding	IPI	J:104800
Molecular Function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	IDA	J:304703
Molecular Function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	ISO	J:164563
Molecular Function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	IDA	J:304761
Molecular Function	GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding	IBA	J:265628
Molecular Function	GO:0043565	sequence-specific DNA binding	IDA	J:154112
Molecular Function	GO:1990837	sequence-specific double-stranded DNA binding	ISO	J:164563
Cellular Component	GO:0000794	condensed nuclear chromosome	IDA	J:93217
Cellular Component	GO:0005654	nucleoplasm	ISO	J:164563
Cellular Component	GO:0005634	nucleus	ISO	J:155856
Cellular Component	GO:0005634	nucleus	IBA	J:265628
Cellular Component	GO:0005634	nucleus	IDA	J:199456
Cellular Component	GO:0005634	nucleus	IDA	J:222297
Cellular Component	GO:0005634	nucleus	IDA	J:185555
Cellular Component	GO:0005634	nucleus	IDA	J:204143
Cellular Component	GO:0005634	nucleus	IDA	J:206154
Cellular Component	GO:0005634	nucleus	IDA	J:194646
Cellular Component	GO:0005634	nucleus	IDA	J:184811
Cellular Component	GO:0005634	nucleus	IDA	J:166464
Cellular Component	GO:0005634	nucleus	IDA	J:193806
Cellular Component	GO:0005634	nucleus	IDA	J:203796
Cellular Component	GO:0005634	nucleus	IDA	J:136803
Cellular Component	GO:0005634	nucleus	IDA	J:104800
Cellular Component	GO:0005634	nucleus	IDA	J:154112
Cellular Component	GO:0005634	nucleus	IDA	J:117056
Cellular Component	GO:0005634	nucleus	IDA	J:136803
Cellular Component	GO:0032991	protein-containing complex	IDA	J:154112
Cellular Component	GO:0017053	transcription repressor complex	IDA	J:104800
Biological Process	GO:0009887	animal organ morphogenesis	IBA	J:265628
Biological Process	GO:0009948	anterior/posterior axis specification	IBA	J:265628
Biological Process	GO:0009952	anterior/posterior pattern specification	IGI	J:154781
Biological Process	GO:0001824	blastocyst development	IMP	J:98502
Biological Process	GO:0001568	blood vessel development	IGI	J:104372
Biological Process	GO:0030154	cell differentiation	IBA	J:265628
Biological Process	GO:0009790	embryo development	IBA	J:265628
Biological Process	GO:0008333	endosome to lysosome transport	IMP	J:161201
Biological Process	GO:0045197	establishment or maintenance of epithelial cell apical/basal polarity	IMP	J:161201
Biological Process	GO:0060575	intestinal epithelial cell differentiation	IMP	J:179218
Biological Process	GO:0060711	labyrinthine layer development	IGI	J:154781
Biological Process	GO:0007275	multicellular organism development	IEA	J:72247
Biological Process	GO:0007275	multicellular organism development	IEA	J:60000
Biological Process	GO:0000122	negative regulation of transcription by RNA polymerase II	ISO	J:164563
Biological Process	GO:0000122	negative regulation of transcription by RNA polymerase II	IDA	J:104800
Biological Process	GO:0000122	negative regulation of transcription by RNA polymerase II	IDA	J:104800
Biological Process	GO:0000122	negative regulation of transcription by RNA polymerase II	IGI	J:104800
Biological Process	GO:0000122	negative regulation of transcription by RNA polymerase II	IGI	J:104800
Biological Process	GO:0007389	pattern specification process	IMP	J:75947
Biological Process	GO:0001890	placenta development	IGI	J:104372
Biological Process	GO:0001890	placenta development	IGI	J:104372
Biological Process	GO:0045597	positive regulation of cell differentiation	IMP	J:179732
Biological Process	GO:0045597	positive regulation of cell differentiation	IDA	J:104800
Biological Process	GO:0008284	positive regulation of cell population proliferation	ISO	J:155856
Biological Process	GO:0045893	positive regulation of DNA-templated transcription	ISO	J:155856
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	IDA	J:304761
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	IDA	J:304703
Biological Process	GO:0006355	regulation of DNA-templated transcription	IEA	J:72247
Biological Process	GO:0014807	regulation of somitogenesis	IMP	J:179218
Biological Process	GO:0006357	regulation of transcription by RNA polymerase II	IBA	J:265628
Biological Process	GO:0006357	regulation of transcription by RNA polymerase II	IDA	J:154112
Biological Process	GO:0035019	somatic stem cell population maintenance	IMP	J:162675
Biological Process	GO:0035019	somatic stem cell population maintenance	IMP	J:104800
Biological Process	GO:0048863	stem cell differentiation	IMP	J:162675
Biological Process	GO:0001829	trophectodermal cell differentiation	IDA	J:222297
Biological Process	GO:0001829	trophectodermal cell differentiation	IMP	J:162675
Biological Process	GO:0001829	trophectodermal cell differentiation	IDA	J:104800
Biological Process	GO:0001829	trophectodermal cell differentiation	IMP	J:222297
Biological Process	GO:0001829	trophectodermal cell differentiation	IMP	J:98502
Biological Process	GO:0001829	trophectodermal cell differentiation	IMP	J:162675
Biological Process	GO:0001829	trophectodermal cell differentiation	IDA	J:104800

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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