GO Annotations Graph

• Symbol: Hoxa1
• Name: homeobox A1
• ID: MGI:96170

GO annotations

A table of the annotations represented in this image is provided below.

• Gray arrows indicate "is_a"; Blue arrows indicate "part_of"; Black arrows indicate "regulates"; Green arrows indicate "positively_regulates"; Red arrows indicate "negatively_regulates"
• Experimental annotations are indicated by darker-colored nodes; other annotations by lighter-colored nodes
• Clicking on any node links to the MGI GO browser and information on all genes annotated to the term or its subterms.
• Graph generated Fri Mar 10 20:53:16 2023.

---

Gene Ontology Evidence Code Abbreviations:

Experimental:

EXP Inferred from experiment

HMP Inferred from high throughput mutant phenotype

HGI Inferred from high throughput genetic interaction

HDA Inferred from high throughput direct assay

HEP Inferred from high throughput expression pattern

IDA Inferred from direct assay

IEP Inferred from expression pattern

IGI Inferred from genetic interaction

IMP Inferred from mutant phenotype

IPI Inferred from physical interaction

Homology:

IAS Inferred from ancestral sequence

IBA Inferred from biological aspect of ancestor

IBD Inferred from biological aspect of descendant

IKR Inferred from key residues

IMR Inferred from missing residues

IRD Inferred from rapid divergence

ISA Inferred from sequence alignment

ISM Inferred from sequence model

ISO Inferred from sequence orthology

ISS Inferred from sequence or structural similarity

Automated:

IEA Inferred from electronic annotation

RCA Reviewed computational analysis

Other:

IC Inferred by curator

NAS Non-traceable author statement

ND No biological data available

TAS Traceable author statement

---

Category	GO ID	Classification Term	Evidence	Reference
Molecular Function	GO:0003677	DNA binding	IEA	J:60000
Molecular Function	GO:0003677	DNA binding	IEA	J:72247
Molecular Function	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific	ISO	J:164563
Molecular Function	GO:0003700	DNA-binding transcription factor activity	IEA	J:72247
Molecular Function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific	IBA	J:265628
Molecular Function	GO:0042802	identical protein binding	ISO	J:164563
Molecular Function	GO:0005515	protein binding	IPI	J:190682
Molecular Function	GO:0005515	protein binding	IPI	J:190682
Molecular Function	GO:0005515	protein binding	IPI	J:190682
Molecular Function	GO:0005515	protein binding	IPI	J:190682
Molecular Function	GO:0005515	protein binding	IPI	J:190682
Molecular Function	GO:0005515	protein binding	IPI	J:190682
Molecular Function	GO:0005515	protein binding	IPI	J:190682
Molecular Function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	IBA	J:265628
Molecular Function	GO:0043565	sequence-specific DNA binding	ISO	J:164563
Molecular Function	GO:1990837	sequence-specific double-stranded DNA binding	ISO	J:164563
Cellular Component	GO:0005654	nucleoplasm	TAS	Reactome:R-MMU-5617955
Cellular Component	GO:0005634	nucleus	IBA	J:265628
Biological Process	GO:0021599	abducens nerve formation	ISO	J:164563
Biological Process	GO:0048646	anatomical structure formation involved in morphogenesis	IGI	J:41540
Biological Process	GO:0009653	anatomical structure morphogenesis	ISO	J:164563
Biological Process	GO:0009653	anatomical structure morphogenesis	IGI	J:41540
Biological Process	GO:0009952	anterior/posterior pattern specification	IMP	J:93020
Biological Process	GO:0009952	anterior/posterior pattern specification	IGI	J:41540
Biological Process	GO:0009952	anterior/posterior pattern specification	IMP	J:93020
Biological Process	GO:0009952	anterior/posterior pattern specification	IMP	J:93020
Biological Process	GO:0060840	artery development	ISO	J:164563
Biological Process	GO:0048844	artery morphogenesis	ISO	J:164563
Biological Process	GO:0071361	cellular response to ethanol	IEP	J:145738
Biological Process	GO:0071300	cellular response to retinoic acid	IDA	J:199178
Biological Process	GO:0021953	central nervous system neuron differentiation	IMP	J:50514
Biological Process	GO:0090102	cochlea development	ISO	J:164563
Biological Process	GO:0090103	cochlea morphogenesis	ISO	J:164563
Biological Process	GO:0050890	cognition	ISO	J:164563
Biological Process	GO:0048702	embryonic neurocranium morphogenesis	ISO	J:164563
Biological Process	GO:0021612	facial nerve structural organization	IGI	J:50514
Biological Process	GO:0021754	facial nucleus development	IMP	J:14491
Biological Process	GO:0030902	hindbrain development	IMP	J:93020
Biological Process	GO:0030902	hindbrain development	IMP	J:93020
Biological Process	GO:0030902	hindbrain development	IMP	J:93020
Biological Process	GO:0048839	inner ear development	ISO	J:164563
Biological Process	GO:0042472	inner ear morphogenesis	IMP	J:93020
Biological Process	GO:0008045	motor neuron axon guidance	IGI	J:50514
Biological Process	GO:0007275	multicellular organism development	IEA	J:60000
Biological Process	GO:0007399	nervous system development	IMP	J:93020
Biological Process	GO:0007399	nervous system development	IMP	J:93020
Biological Process	GO:0050905	neuromuscular process	ISO	J:164563
Biological Process	GO:0007634	optokinetic behavior	ISO	J:164563
Biological Process	GO:0042473	outer ear morphogenesis	ISO	J:164563
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	ISO	J:164563
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	IDA	J:141247
Biological Process	GO:0050795	regulation of behavior	ISO	J:164563
Biological Process	GO:0006355	regulation of DNA-templated transcription	IEA	J:72247
Biological Process	GO:0006357	regulation of transcription by RNA polymerase II	IBA	J:265628
Biological Process	GO:0006357	regulation of transcription by RNA polymerase II	IDA	J:93149
Biological Process	GO:0021569	rhombomere 3 development	IMP	J:50514
Biological Process	GO:0021569	rhombomere 3 development	IGI	J:50514
Biological Process	GO:0021570	rhombomere 4 development	IGI	J:41540
Biological Process	GO:0021570	rhombomere 4 development	IMP	J:14491
Biological Process	GO:0021570	rhombomere 4 development	IMP	J:50514
Biological Process	GO:0021571	rhombomere 5 development	IGI	J:41540
Biological Process	GO:0021571	rhombomere 5 development	IMP	J:14491
Biological Process	GO:0021571	rhombomere 5 development	IMP	J:50514
Biological Process	GO:0060876	semicircular canal formation	ISO	J:164563
Biological Process	GO:0007605	sensory perception of sound	ISO	J:164563