Rarg GO Annotations Graph

GO Annotations Graph

Symbol
Name
ID

Rarg
retinoic acid receptor, gamma
MGI:97858

GO annotations (Text View) (Tabular View)

A table of the annotations represented in this image is provided below.

Gray arrows indicate "is_a"; Blue arrows indicate "part_of"; Black arrows indicate "regulates"; Green arrows indicate "positively_regulates"; Red arrows indicate "negatively_regulates"
Experimental annotations are indicated by darker-colored nodes; other annotations by lighter-colored nodes
Clicking on any node links to the MGI GO browser and information on all genes annotated to the term or its subterms.
Graph generated Fri Mar 10 20:53:16 2023.

Gene Ontology Evidence Code Abbreviations:

Experimental:

EXP: Inferred from experiment
HMP: Inferred from high throughput mutant phenotype
HGI: Inferred from high throughput genetic interaction
HDA: Inferred from high throughput direct assay
HEP: Inferred from high throughput expression pattern
IDA: Inferred from direct assay
IEP: Inferred from expression pattern
IGI: Inferred from genetic interaction
IMP: Inferred from mutant phenotype
IPI: Inferred from physical interaction

Homology:

IAS: Inferred from ancestral sequence
IBA: Inferred from biological aspect of ancestor
IBD: Inferred from biological aspect of descendant
IKR: Inferred from key residues
IMR: Inferred from missing residues
IRD: Inferred from rapid divergence
ISA: Inferred from sequence alignment
ISM: Inferred from sequence model
ISO: Inferred from sequence orthology
ISS: Inferred from sequence or structural similarity

Automated:

IEA: Inferred from electronic annotation
RCA: Reviewed computational analysis

Other:

IC: Inferred by curator
NAS: Non-traceable author statement
ND: No biological data available
TAS: Traceable author statement

Category	GO ID	Classification Term	Evidence	Reference
Molecular Function	GO:0003682	chromatin binding	IDA	J:92505
Molecular Function	GO:0003677	DNA binding	IDA	J:137480
Molecular Function	GO:0003700	DNA-binding transcription factor activity	IDA	J:137480
Molecular Function	GO:0046872	metal ion binding	IEA	J:60000
Molecular Function	GO:0004879	nuclear receptor activity	ISO	J:155856
Molecular Function	GO:0004879	nuclear receptor activity	IBA	J:265628
Molecular Function	GO:0046965	nuclear retinoid X receptor binding	IMP	J:137480
Molecular Function	GO:0005515	protein binding	IPI	J:245379
Molecular Function	GO:0005515	protein binding	IPI	J:92505
Molecular Function	GO:0005515	protein binding	IPI	J:149466
Molecular Function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	IBA	J:265628
Molecular Function	GO:0043565	sequence-specific DNA binding	IEA	J:72247
Molecular Function	GO:1990837	sequence-specific double-stranded DNA binding	ISO	J:164563
Molecular Function	GO:0008270	zinc ion binding	IEA	J:72247
Cellular Component	GO:0000785	chromatin	ISO	J:164563
Cellular Component	GO:0005737	cytoplasm	IEA	J:60000
Cellular Component	GO:0005654	nucleoplasm	ISO	J:164563
Cellular Component	GO:0005654	nucleoplasm	TAS	Reactome:R-MMU-5617960
Cellular Component	GO:0005654	nucleoplasm	TAS	Reactome:R-MMU-5617990
Cellular Component	GO:0005654	nucleoplasm	TAS	Reactome:R-MMU-5693628
Cellular Component	GO:0005634	nucleus	ISO	J:164563
Cellular Component	GO:0005634	nucleus	IDA	J:92505
Cellular Component	GO:0005667	transcription regulator complex	IDA	J:137480
Biological Process	GO:0009952	anterior/posterior pattern specification	IMP	J:73281
Biological Process	GO:0009952	anterior/posterior pattern specification	IGI	J:73281
Biological Process	GO:0009952	anterior/posterior pattern specification	IGI	J:73281
Biological Process	GO:0009952	anterior/posterior pattern specification	IMP	J:12691
Biological Process	GO:0006915	apoptotic process	IGI	J:102847
Biological Process	GO:0060348	bone development	IMP	J:149466
Biological Process	GO:0060348	bone development	IGI	J:21009
Biological Process	GO:0060348	bone development	IGI	J:21009
Biological Process	GO:0060349	bone morphogenesis	IMP	J:12691
Biological Process	GO:0060349	bone morphogenesis	IMP	J:73281
Biological Process	GO:0060349	bone morphogenesis	IGI	J:73281
Biological Process	GO:0030154	cell differentiation	IBA	J:265628
Biological Process	GO:0008283	cell population proliferation	IGI	J:54066
Biological Process	GO:1990830	cellular response to leukemia inhibitory factor	IEP	J:163558
Biological Process	GO:0002063	chondrocyte development	IMP	J:149466
Biological Process	GO:0031076	embryonic camera-type eye development	IGI	J:21009
Biological Process	GO:0048048	embryonic eye morphogenesis	IGI	J:102847
Biological Process	GO:0035116	embryonic hindlimb morphogenesis	IGI	J:54066
Biological Process	GO:0060429	epithelium development	IMP	J:12691
Biological Process	GO:0060429	epithelium development	IMP	J:12691
Biological Process	GO:0060324	face development	IGI	J:21009
Biological Process	GO:0048732	gland development	IMP	J:12691
Biological Process	GO:0002068	glandular epithelial cell development	IGI	J:21009
Biological Process	GO:0002068	glandular epithelial cell development	IGI	J:21009
Biological Process	GO:0002068	glandular epithelial cell development	IGI	J:21009
Biological Process	GO:0002068	glandular epithelial cell development	IGI	J:21009
Biological Process	GO:0003430	growth plate cartilage chondrocyte growth	IMP	J:149466
Biological Process	GO:0003417	growth plate cartilage development	IGI	J:149466
Biological Process	GO:0003417	growth plate cartilage development	IGI	J:149466
Biological Process	GO:0070384	Harderian gland development	IMP	J:12691
Biological Process	GO:0009755	hormone-mediated signaling pathway	IBA	J:265628
Biological Process	GO:0060173	limb development	IMP	J:149466
Biological Process	GO:0060173	limb development	IGI	J:21009
Biological Process	GO:0035264	multicellular organism growth	IGI	J:149466
Biological Process	GO:0035264	multicellular organism growth	IGI	J:149466
Biological Process	GO:0061037	negative regulation of cartilage development	IMP	J:60610
Biological Process	GO:0045596	negative regulation of cell differentiation	IMP	J:60610
Biological Process	GO:0032331	negative regulation of chondrocyte differentiation	IMP	J:60610
Biological Process	GO:2000647	negative regulation of stem cell proliferation	IGI	J:54066
Biological Process	GO:0000122	negative regulation of transcription by RNA polymerase II	IBA	J:265628
Biological Process	GO:0000122	negative regulation of transcription by RNA polymerase II	IDA	J:17599
Biological Process	GO:0001843	neural tube closure	IGI	J:21009
Biological Process	GO:0043065	positive regulation of apoptotic process	IGI	J:102847
Biological Process	GO:0008284	positive regulation of cell population proliferation	ISO	J:155856
Biological Process	GO:0010628	positive regulation of gene expression	IDA	J:149466
Biological Process	GO:0043068	positive regulation of programmed cell death	IGI	J:54066
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	IC	J:137480
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	IBA	J:265628
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	IDA	J:98785
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	IDA	J:92505
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	IGI	J:98265
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	IGI	J:98265
Biological Process	GO:0012501	programmed cell death	IGI	J:54066
Biological Process	GO:0012501	programmed cell death	IGI	J:54066
Biological Process	GO:0060740	prostate gland epithelium morphogenesis	IMP	J:12691
Biological Process	GO:0006355	regulation of DNA-templated transcription	IEA	J:72247
Biological Process	GO:0010468	regulation of gene expression	IGI	J:149466
Biological Process	GO:0031641	regulation of myelination	ISO	J:155856
Biological Process	GO:0045637	regulation of myeloid cell differentiation	IGI	J:193750
Biological Process	GO:0048608	reproductive structure development	IMP	J:12691
Biological Process	GO:0032526	response to retinoic acid	ISO	J:164563
Biological Process	GO:0048384	retinoic acid receptor signaling pathway	ISO	J:155856
Biological Process	GO:0048384	retinoic acid receptor signaling pathway	ISO	J:164563
Biological Process	GO:0048384	retinoic acid receptor signaling pathway	IBA	J:265628
Biological Process	GO:0048384	retinoic acid receptor signaling pathway	IMP	J:12691
Biological Process	GO:0072089	stem cell proliferation	IGI	J:54066
Biological Process	GO:0060534	trachea cartilage development	IMP	J:12691

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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