GO Annotations Graph

• Symbol: Ybx1
• Name: Y box protein 1
• ID: MGI:99146

GO annotations

A table of the annotations represented in this image is provided below.

• Gray arrows indicate "is_a"; Blue arrows indicate "part_of"; Black arrows indicate "regulates"; Green arrows indicate "positively_regulates"; Red arrows indicate "negatively_regulates"
• Experimental annotations are indicated by darker-colored nodes; other annotations by lighter-colored nodes
• Clicking on any node links to the MGI GO browser and information on all genes annotated to the term or its subterms.
• Graph generated Fri Mar 10 20:53:16 2023.

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Gene Ontology Evidence Code Abbreviations:

Experimental:

EXP Inferred from experiment

HMP Inferred from high throughput mutant phenotype

HGI Inferred from high throughput genetic interaction

HDA Inferred from high throughput direct assay

HEP Inferred from high throughput expression pattern

IDA Inferred from direct assay

IEP Inferred from expression pattern

IGI Inferred from genetic interaction

IMP Inferred from mutant phenotype

IPI Inferred from physical interaction

Homology:

IAS Inferred from ancestral sequence

IBA Inferred from biological aspect of ancestor

IBD Inferred from biological aspect of descendant

IKR Inferred from key residues

IMR Inferred from missing residues

IRD Inferred from rapid divergence

ISA Inferred from sequence alignment

ISM Inferred from sequence model

ISO Inferred from sequence orthology

ISS Inferred from sequence or structural similarity

Automated:

IEA Inferred from electronic annotation

RCA Reviewed computational analysis

Other:

IC Inferred by curator

NAS Non-traceable author statement

ND No biological data available

TAS Traceable author statement

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Category	GO ID	Classification Term	Evidence	Reference
Molecular Function	GO:0062153	C5-methylcytidine-containing RNA binding	ISO	J:164563
Molecular Function	GO:0003682	chromatin binding	IDA	J:211289
Molecular Function	GO:0003677	DNA binding	IEA	J:60000
Molecular Function	GO:0051020	GTPase binding	ISO	J:164563
Molecular Function	GO:0035198	miRNA binding	ISO	J:164563
Molecular Function	GO:0003729	mRNA binding	IDA	J:261926
Molecular Function	GO:0003729	mRNA binding	ISO	J:155856
Molecular Function	GO:0003676	nucleic acid binding	IBA	J:265628
Molecular Function	GO:0002039	p53 binding	ISO	J:155856
Molecular Function	GO:0005515	protein binding	IPI	J:231209
Molecular Function	GO:0005515	protein binding	IPI	J:244072
Molecular Function	GO:0005515	protein binding	IPI	J:96946
Molecular Function	GO:0005515	protein binding	IPI	J:158858
Molecular Function	GO:0005515	protein binding	IPI	J:36107
Molecular Function	GO:0003723	RNA binding	ISO	J:164563
Molecular Function	GO:0003723	RNA binding	ISO	J:155856
Molecular Function	GO:0043565	sequence-specific DNA binding	ISO	J:155856
Molecular Function	GO:1990837	sequence-specific double-stranded DNA binding	ISO	J:164563
Molecular Function	GO:0003697	single-stranded DNA binding	ISO	J:155856
Molecular Function	GO:0003697	single-stranded DNA binding	IDA	J:94649
Cellular Component	GO:0070937	CRD-mediated mRNA stability complex	ISO	J:164563
Cellular Component	GO:0005737	cytoplasm	ISO	J:155856
Cellular Component	GO:0005737	cytoplasm	ISO	J:164563
Cellular Component	GO:0005737	cytoplasm	IDA	J:158858
Cellular Component	GO:0010494	cytoplasmic stress granule	ISO	J:164563
Cellular Component	GO:0005829	cytosol	ISO	J:164563
Cellular Component	GO:0030425	dendrite	ISO	J:155856
Cellular Component	GO:0005783	endoplasmic reticulum	ISO	J:164563
Cellular Component	GO:0070062	extracellular exosome	ISO	J:164563
Cellular Component	GO:0005576	extracellular region	IEA	J:60000
Cellular Component	GO:0071204	histone pre-mRNA 3'end processing complex	IDA	J:151443
Cellular Component	GO:0043231	intracellular membrane-bounded organelle	ISO	J:164563
Cellular Component	GO:1990124	messenger ribonucleoprotein complex	ISO	J:155856
Cellular Component	GO:1990124	messenger ribonucleoprotein complex	IBA	J:265628
Cellular Component	GO:0043025	neuronal cell body	ISO	J:155856
Cellular Component	GO:0005634	nucleus	ISO	J:155856
Cellular Component	GO:0005634	nucleus	IBA	J:265628
Cellular Component	GO:0005634	nucleus	IGI	J:158858
Cellular Component	GO:0048471	perinuclear region of cytoplasm	ISO	J:155856
Cellular Component	GO:0005886	plasma membrane	ISO	J:164563
Cellular Component	GO:1990904	ribonucleoprotein complex	ISO	J:164563
Cellular Component	GO:0045202	synapse	EXP	J:263419
Cellular Component	GO:0045202	synapse	IDA	J:263419
Cellular Component	GO:0005689	U12-type spliceosomal complex	ISO	J:164563
Biological Process	GO:0098761	cellular response to interleukin-7	IDA	J:260356
Biological Process	GO:0070934	CRD-mediated mRNA stabilization	ISO	J:164563
Biological Process	GO:0008544	epidermis development	IMP	J:261926
Biological Process	GO:0001701	in utero embryonic development	IGI	J:115970
Biological Process	GO:0001701	in utero embryonic development	IMP	J:115970
Biological Process	GO:1990428	miRNA transport	ISO	J:164563
Biological Process	GO:0006397	mRNA processing	IEA	J:60000
Biological Process	GO:0048255	mRNA stabilization	ISO	J:164563
Biological Process	GO:2000773	negative regulation of cellular senescence	IMP	J:261926
Biological Process	GO:1900152	negative regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay	ISO	J:164563
Biological Process	GO:0051154	negative regulation of striated muscle cell differentiation	IDA	J:158858
Biological Process	GO:0000122	negative regulation of transcription by RNA polymerase II	IDA	J:158858
Biological Process	GO:0000122	negative regulation of transcription by RNA polymerase II	IGI	J:158858
Biological Process	GO:0051781	positive regulation of cell division	IEA	J:60000
Biological Process	GO:2000767	positive regulation of cytoplasmic translation	ISO	J:164563
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	ISO	J:164563
Biological Process	GO:1903608	protein localization to cytoplasmic stress granule	ISO	J:164563
Biological Process	GO:0006355	regulation of DNA-templated transcription	ISO	J:164563
Biological Process	GO:0010468	regulation of gene expression	IBA	J:265628
Biological Process	GO:0008380	RNA splicing	IEA	J:60000
Biological Process	GO:0050658	RNA transport	ISO	J:164563
Biological Process	GO:0051031	tRNA transport	ISO	J:164563