Rara Phenotype Annotations

Mammalian Phenotype Ontology Annotations
Query Results - Summary

Symbol
Name
ID

Rara
retinoic acid receptor, alpha
MGI:97856

33 phenotypes from 5 alleles in 5 genetic backgrounds

Allelic Composition Genetic Background	Annotated Term	Reference
Rara^tm1.1Ybe/Rara^tm1.1Ybe involves: C57BL/6N	abnormal lymphopoiesis	J:207485
Rara^tm1Ipc/Rara⁺ involves: 129S2/SvPas	abnormal cricoid cartilage morphology	J:42773
Rara^tm1Ipc/Rara^tm1Ipc involves: 129S2/SvPas	abnormal alisphenoid bone morphology	J:42773
	abnormal cervical axis morphology	J:21009
	abnormal cervical vertebrae morphology	J:21009
	abnormal cricoid cartilage morphology	J:42773
	abnormal hyoid bone morphology	J:42773
	abnormal incus morphology	J:42773
	abnormal skeleton morphology	J:21009
	abnormal spermatogenesis	J:13574
	abnormal testis morphology	J:13574
	abnormal thyroid cartilage morphology	J:42773
	cervical vertebral fusion	J:21009
	cervical vertebral transformation	J:21009
	interdigital webbing	J:13574
	male infertility	J:13574
	neonatal lethality, incomplete penetrance	J:13574
	oligozoospermia	J:13574
	postnatal growth retardation	J:13574
	premature death	J:13574
	seminiferous tubule degeneration	J:13574
Rara^tm1Ipc/Rara^tm1Ipc involves: 129S2/SvPas * C57BL/6	abnormal male germ cell apoptosis	J:98529
	abnormal skeleton morphology	J:43344
	abnormal spermatid morphology	J:98529
	abnormal spermiogenesis	J:98529
	abnormal temporal bone squamous part morphology	J:43344
	abnormal thyroid cartilage morphology	J:43344
	abnormal tracheal cartilage morphology	J:43344
	cervical vertebral transformation	J:43344
	fusion of atlas and odontoid process	J:43344
	fusion of vertebral arches	J:43344
	lumbar vertebral transformation	J:43344
	male infertility	J:98529
	narrow eye opening	J:43344
	oligozoospermia	J:98529
	teratozoospermia	J:98529
	thoracic vertebral transformation	J:43344
	vertebral transformation	J:43344
Rara^tm1Rev/Rara^tm1Rev involves: 129S4/SvJae	no abnormal phenotype detected	J:3997
Rara^tm2Ipc/Rara^tm2Ipc involves: 129S2/SvPas	no abnormal phenotype detected	J:13574
Rara^tm3.1Ipc/Rara^tm3.1Ipc involves: 129/Sv * C57BL/6 * SJL	abnormal testis morphology	J:75135
	male infertility	J:75135

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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