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GLN3 Probe Detail
Nucleotide
Probe/Clone
  • Name
    GLN3
  • Sequence Type
    oligo
  • ID
    MGI:10795
  • Region Covered
    contains the U5 region of the GLN3 retrotransposon LTR (CCGATTCGACGTGTACCCAAGAA)
  • Insert Size
    23 bp
Source
  • Species
    Not Specified
Genes
Gln3-1 GLN retrotransposon family 3-1
Gln3-2 GLN retrotransposon family 3-2
Gln3-3 GLN retrotransposon family 3-3
Gln3-4 GLN retrotransposon family 3-4
Gln3-5 GLN retrotransposon family 3-5
Gln3-6 GLN retrotransposon family 3-6
Gln3-7 GLN retrotransposon family 3-7
Gln3-8 GLN retrotransposon family 3-8
Gln3-9 GLN retrotransposon family 3-9
Polymorphisms
J:2519 Lueders KK, Mouse Genome. 1992;90(3):436-38
Endonuclease Gene Allele Fragments Strains
HindIII Gln3-1 b 20kb C57BL/6J
d absent DBA/2J
HindIII Gln3-2 b 4.7kb C57BL/6J
d absent DBA/2J
HindIII Gln3-3 b 4.6kb C57BL/6J
d absent DBA/2J
HindIII Gln3-4 b 3.4kb C57BL/6J
d absent DBA/2J
HindIII Gln3-5 b absent C57BL/6J
d 12.0kb DBA/2J
HindIII Gln3-6 b absent C57BL/6J
d 4.9kb DBA/2J
HindIII Gln3-7 b absent C57BL/6J
d 1.9kb DBA/2J
J:22095 Lueders KK, Mouse Genome. 1994;92(4):691-693
Endonuclease Gene Allele Fragments Strains
HindIII Gln3-2 a absent A/J
b ~4.5kb C57BL/6J
HindIII Gln3-4 a absent A/J
b ~3.8kb C57BL/6J
HindIII Gln3-5 a ~15.0kb A/J
b absent C57BL/6J
HindIII Gln3-6 a ~4.8kb A/J
b absent C57BL/6J
HindIII Gln3-7 a ~1.8kb A/J
b absent C57BL/6J
HindIII Gln3-9 a absent A/J
b ~4.6kb C57BL/6J
J:22798 Lueders KK, Mamm Genome. 1995 Feb;6(2):134-6
Endonuclease Gene Allele Fragments Strains
HindIII Gln3-2 b ~4.3kb C57BL/6J
d absent C57BLKS/J, DBA/2J
HindIII Gln3-3 b ~3.3kb C57BL/6J
d absent C57BLKS/J, DBA/2J
HindIII Gln3-4 b ~3.3kb C57BL/6J
d absent C57BLKS/J, DBA/2J
HindIII Gln3-5 b absent C57BL/6J
d ~10.2kb C57BLKS/J, DBA/2J
HindIII Gln3-6 b absent C57BL/6J
d ~4.5kb C57BLKS/J, DBA/2J
HindIII Gln3-7 b absent C57BL/6J
d ~1.8kb C57BLKS/J, DBA/2J
HindIII Gln3-8 b absent C57BL/6J
d ~8.1kb C57BLKS/J, DBA/2J
References
J:2519 Lueders KK, Mapping of GLN retrotransposon LTR sequences in the BXD RI series. Mouse Genome. 1992;90(3):436-38
J:22095 Lueders KK, Mapping of Gln3 retrotransposon sequences in the AXB BXA RI series. Mouse Genome. 1994;92(4):691-693
J:22798 Lueders KK, Differences in intracisternal A-particle and GLN proviral loci suggest a genetic contribution from a DBA/2-like strain in generation of the C57BL/Ks strain. Mamm Genome. 1995 Feb;6(2):134-6
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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08/02/2024
MGI 6.24 		The Jackson Laboratory