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MTF#101 Probe Detail
Nucleotide
Probe/Clone
  • Name
    MTF#101
  • Sequence Type
    cDNA
  • ID
    MGI:3505988
  • Region Covered
    Nucleotides 1113-1897 of GenBank Accession ID AB005457.
  • Vector Type
    Plasmid
  • Insert Site
    BamHI/HindIII
  • Insert Size
    0.784kb
  • Note
    Fragment was generated by PCR with primers CGCGGATCCACGTGACGCGCGTGGCCAATGG and CCCAAGCTTGGCATCGCTTCTTCCGAGTGG. Template sequenceprovided by Paul Gray:
    CNGNANNNGCGGCCGCCAGTGTGATGGATATCTGCAGAATTCGGCTTCCCAAGCTTGGCA
    TCGCTTCTTCCGAGTGGAGCGAGCATGTAGCCAGTTGGCAGCCGGGTTATTGGGATCGAT
    GGGGGGCTTGTCTCCGCCGCTCTCATTCTCGGCATTGTTTTCGGAGAAGGCGCCTTCGCT
    GGGTTGTTTTTCTCTATCAACTGGAGGAGAACCACAAGCATAGTCAGTCAGGGACAAAGT
    GTGAGTGTCAAGCGTGGGACAGTCACCCCTTCTGGCCGAGAGCGGTTCAGGTTTAATGCC
    ATAAGGCCGGCTGGAGGGTAAGCCCGCGAAGGAGAGCGCACCGGGCGTGGGTTCCAGCCA
    GGAGCGCATATACCTGCCGTCCGGCGCCGCCGCCGCCACGGGCGCCTGGGGATGCACGTA
    GGGGTGGTGGTGGTGANGATTTTCTGCANCAAGCNCCNNNATTGNTTNCCCNCTCNCCGT
    NGNACCGNTGTTCCACNCAGGTCACCAAACCACCCNGNCACAATATGNATCTGGANNACC
    CGCCNCATNTCCTGATTTCCCACGCTNCCTCNCNGNNTATANNNTGNNNTCCCNNGTCTN
    TGNTAANANAAANTTAANNNNTATCCTCGCNATCNTCANCCGCNTCNTAANTTCCTNTAA
    ATTCCCCNTAANGAAATATANAACNTNNCNCNCCAAANTNNANNATATAGACAAANNAAA
    CCGANCNNNATACATNCNNAACACCCCANATACNCCATTGAATTNNCNTTATCCNTNTTT
    NTANNAGNCAANCACTCTNTTCNCCCNNCCCCNCTNCAATTCACNCTNCTTTNTATCNNT
    CNCATCGACTACTTTNNACNNTCTTNGTNCACNNNNGTNNCNCACTATATACATNCTCAC
    TCTTCNCTCTATAAANNTCTNNACTTTNTATCCCNNACCCACNCANNTACNTATCCATNT
    ANCANNCTNCACNNCNTTAACNNNANCTATANNATCCCNNCCNATACCAAATNACCAACC
    CAATNNTANANANTTTANCCAACAANANTCCANCANAANCANTNCNAANNGAANTCCACN
    CNCNANAATAATATNANNNACGCGTGCACCAANCATNNACGGAATNTNGNCACANAAAAN
    ANNANGGCCNNCCCTNTTTNTAANNCTNTNCCCCCCCTNGNTCCNCNCCCCCTTTACNCC
    CCCNCNCCCCNNAGNCNAACNNACCANNNCCCNANNTTNNTCCTNCTGNGNNNNANCAAA
    AGTANTAATNNAACCAATACCNNCCACCAACCNCANATTNANAAAACGNNTTTGNCANNG
    NNNNNNCCCNNTNNTGGNGTCCCNCCCCCCNCNCCCCACCTTNCNGTTCTAAAAAAACTT
    GTCCTTCCGCNCCNANNNTTTANTNCCATNCCTATNATNTTNGGTCNTNGNGTNANNCAA
    CTCCNACNTNCACATACAACCGCCACAANCNATNNNTNACAANCCCCNTACCTTATNNCC
    TTCCNCCACNNTCANATGTNATCTCANTGNAATTNTCCCNNCCNCAACTCCNGNCGNNCC
    GNATTTTCTCTANGAGGGAAACCCCTCAANCTNTCTTNTTATTTTCCTATGCCNATCTTA
    TTTTGNTATTCCTCCCCCTATNCTTCTTTNACCCCCCTNNNNTTNACCNCANGACGAATA
    ATGANCCGAAAACAATANNAATTANNNNTNAGCCCCCCCCCNATANNCNTNCGTAGTNAT
    TAATTTNAACACCNCCAANCCCACCCCCCCCCCNNTCTNTTTNCTCCANCCCNTNG
  • Synonyms
    GUDMAP:5250 probe, maprobe:69
Source
  • Species
    mouse, laboratory
  • Strain
    C57BL
  • Age
    embryonic day 13.5
  • Tissue
    brain
Genes
Hoxa9 homeobox A9
Expression
  • Assay Results
    53
Sequences
AB005457 (GenBank | EMBL | ENA | DDBJ | MGI Sequence Detail)
References
J:91257 Gray PA, et al., Mouse Brain Organization Revealed Through Direct Genome-Scale TF Expression Analysis. Science. 2004 Dec 24;306(5705):2255-2257
J:171409 GUDMAP Consortium, GUDMAP: the GenitoUrinary Development Molecular Anatomy Project. www.gudmap.org. 2004;
J:168654 Chung YC, et al., Screening large numbers of expression patterns of transcription factors in late stages of the mouse thymus. Gene Expr Patterns. 2011 Jan-Feb;11(1-2):84-92
J:186535 Herriges JC, et al., Genome-scale study of transcription factor expression in the branching mouse lung. Dev Dyn. 2012 Sep;241(9):1432-53
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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06/12/2024
MGI 6.13 		The Jackson Laboratory