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MTF#135 Probe Detail
Nucleotide
Probe/Clone
  • Name
    MTF#135
  • Sequence Type
    cDNA
  • ID
    MGI:3506018
  • Region Covered
    Nucleotides 219-981 of GenBank Accession ID U56400.
  • Vector Type
    Plasmid
  • Insert Site
    BamHI/HindIII
  • Insert Size
    0.762kb
  • Note
    The source of the material used to create this cDNA probe was different than that used to create the GenBank sequence record. Fragment was generated by PCR with primers CGCGGATCCTCCTCATCAGCCTTACCCACCC and CCCAAGCTTCGAGGGTGCGTCGTAGGCCAGG. Template sequence provided by Paul Gray:
    CTCGAGGTCGACGGTATCGATAAGCTTCGAGGGTGCGTCGTAGGCCAGGCCGGGCACCGG
    CGGCAGCTGGCCGGAGTAAGCCACGTGGCCCGCCGCTCCTCCAAGAGGTGGGCTGCGCTC
    CGGGGACTGACCGGCTGGAGAATGCAGGATGCCCTTAGCCTTCTGGTCCTTCTTGTACTT
    CATGCGACGGTTCTGGAACCAGATCTTGATCTGGCGTTCGGTGAGGTTCAGCAGGTTGGC
    CATCTCCACGCGGCGCGGCCGGCACAGATAGCGGTTGAAGTGGAACTCCTTCTCCAGCTC
    CACCAGCTGAGCACTCGTGTACGCCGTGCGCACCCTCTTGGATGCTGGGCCGGGTGGGCT
    CTTGTCCTCACAGTTCTCTCCTGAAGTGGCACAGCTGTTCTTCTGCTTGGAGTTCTGTCG
    GGATTCTTTCATCCAGGGGAAGATCTGTTTGCTGATGGTGGATGAAGAGCTAGAAGCACT
    GAGTCCACCCTTGGTCTTCTTGGCAGGCACTCCACTTCCAGGATTGGTAGGTGAAGATGG
    GGGCAAGGTGGGTGGTGGGGGAAGNAAGNANGTTGTGNTGNCTGCTGTTCTGANTTCANA
    CCANGGGGTTGGTTGCCACCNCCTCCANNCTGNNTATTCCCANTGNCNNGNCNCAACANN
    TACCATTNANNTNNNNTNCNTTGNGGNNTGGNGNTCNNANANNNGNNNANNNCNNNNNGG
    NNNNNGNNNANNNTGNNNAACNCNGNNCNNNGNNNTNGNNNNNNNNNGNNNGGGNNANGN
    NNAANANNANGANCCNNNNNNTNNNNANNGNNNNCNNCCNNNNNGGANNNCCNNNTTTNG
    TNCCCTTTNNNNAGGNNNANTNNNANNNNGNNNNNNNNNNGNNNNNNNNNGNTNCCNGNN
    NNAANTNNNNNNCNNNNNNNNNTNNNNNNNNNNNNNNNNCNNNNNNNNANNNNNAANNCN
    NGNGNGNCNNNNNNNNGNNNNNNNCNCNNNNNNTNN
  • Synonyms
    GUDMAP:5279 probe, GUDMAP:13916 probe, maprobe:95
Source
  • Species
    mouse, laboratory
  • Strain
    C57BL
  • Age
    embryonic day 13.5
  • Tissue
    brain
Genes
Hoxd3 homeobox D3
Expression
  • Assay Results
    58
Sequences
U56400 (GenBank | EMBL | ENA | DDBJ | MGI Sequence Detail)
References
J:91257 Gray PA, et al., Mouse Brain Organization Revealed Through Direct Genome-Scale TF Expression Analysis. Science. 2004 Dec 24;306(5705):2255-2257
J:171409 GUDMAP Consortium, GUDMAP: the GenitoUrinary Development Molecular Anatomy Project. www.gudmap.org. 2004;
J:152838 Fu H, et al., A genome-wide screen for spatially restricted expression patterns identifies transcription factors that regulate glial development. J Neurosci. 2009 Sep 9;29(36):11399-408
J:171421 Vandunk C, et al., Development, maturation, and necessity of transcription factors in the mouse suprachiasmatic nucleus. J Neurosci. 2011 Apr 27;31(17):6457-67
J:190636 Wiese CB, et al., A genome-wide screen to identify transcription factors expressed in pelvic ganglia of the lower urinary tract. Front Neurosci. 2012;6:130
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
10/09/2024
MGI 6.24 		The Jackson Laboratory