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JS140, JS135 Primer Detail
Primers
  • Name
    JS140, JS135
  • Primer 1 Sequence
    TTTGCCGCAGAAGATTCTGG
  • Primer 2 Sequence
    GACTGCTCTTCCGAAGGTCC
  • ID
    MGI:806
Genes
Iap5rb1 intracisternal A-type particle, U5 region, SINE repeat b-1
Iap5rb10 intracisternal A-type particle, U5 region, SINE repeat b-10
Iap5rb11 intracisternal A-type particle, U5 region, SINE repeat b-11
Iap5rb12 intracisternal A-type particle, U5 region, SINE repeat b-12
Iap5rb13 intracisternal A-type particle, U5 region, SINE repeat b-13
Iap5rb14 intracisternal A-type particle, U5 region, SINE repeat b-14
Iap5rb15 intracisternal A-type particle, U5 region, SINE repeat b-15
Iap5rb16 intracisternal A-type particle, U5 region, SINE repeat b-16
Iap5rb17 intracisternal A-type particle, U5 region, SINE repeat b-17
Iap5rb18 intracisternal A-type particle, U5 region, SINE repeat b-18
Iap5rb19 intracisternal A-type particle, U5 region, SINE repeat b-19
Iap5rb2 intracisternal A-type particle, U5 region, SINE repeat b-2
Iap5rb20 intracisternal A-type particle, U5 region, SINE repeat b-20
Iap5rb21 intracisternal A-type particle, U5 region, SINE repeat b-21
Iap5rb23 intracisternal A-type particle, U5 region, SINE repeat b-23
Iap5rb24 intracisternal A-type particle, U5 region, SINE repeat b-24
Iap5rb3 intracisternal A-type particle, U5 region, SINE repeat b-3
Iap5rb4 intracisternal A-type particle, U5 region, SINE repeat b-4
Iap5rb5 intracisternal A-type particle, U5 region, SINE repeat b-5
Iap5rb6 intracisternal A-type particle, U5 region, SINE repeat b-6
Iap5rb7 intracisternal A-type particle, U5 region, SINE repeat b-7
Iap5rb8 intracisternal A-type particle, U5 region, SINE repeat b-8
Iap5rb9 intracisternal A-type particle, U5 region, SINE repeat b-9
Polymorphisms
J:21511 Kaushik N, et al., Mamm Genome. 1994 Nov;5(11):688-95
Endonuclease Gene Allele Fragments Strains
Iap5rb1 b 129bp C57BL/6J
s absent C3H/HeJ, M. spretus
Iap5rb2 b 141bp C57BL/6J
s absent C3H/HeJ, M. spretus
Iap5rb3 b 170bp C57BL/6J
s absent C3H/HeJ, M. spretus
Iap5rb4 b 185bp C57BL/6J
s absent C3H/HeJ, M. spretus
Iap5rb5 b 198bp C3H/HeJ
s absent C57BL/6J, M. spretus
Iap5rb6 b 205bp C3H/HeJ
s absent C57BL/6J, M. spretus
Iap5rb7 b 213bp C3H/HeJ
s absent C57BL/6J, M. spretus
Iap5rb8 b 328bp C57BL/6J
s absent C3H/HeJ, M. spretus
Iap5rb9 b 375bp C57BL/6J
s absent C3H/HeJ, M. spretus
Iap5rb10 b 520bp C57BL/6J
s absent C3H/HeJ, M. spretus
Iap5rb11 b 820bp C3H/HeJ
s absent C57BL/6J, M. spretus
Iap5rb12 b 850bp C3H/HeJ
s absent C57BL/6J, M. spretus
Iap5rb13 b 121bp STS/A
s absent BALB/cJ, M. spretus
Iap5rb14 b 136bp BALB/cJ
s absent M. spretus, STS/A
Iap5rb15 b 143bp BALB/cJ
s absent M. spretus, STS/A
Iap5rb16 b 145bp STS/A
s absent BALB/cJ, M. spretus
Iap5rb17 b 170bp BALB/cJ
s absent M. spretus, STS/A
Iap5rb18 b 213bp BALB/cJ
s absent M. spretus, STS/A
Iap5rb19 b 217bp STS/A
s absent BALB/cJ, M. spretus
Iap5rb20 b 268bp BALB/cJ
s absent M. spretus, STS/A
Iap5rb21 b 361bp STS/A
s absent BALB/cJ, M. spretus
Iap5rb22 b 420bp BALB/cJ
s absent M. spretus, STS/A
Iap5rb23 b 550bp BALB/cJ
s absent M. spretus, STS/A
Iap5rb24 b 565bp STS/A
s absent BALB/cJ, M. spretus
References
J:21511 Kaushik N, et al., Intracisternal A-type particle elements as genetic markers: detection by repeat element viral element amplified locus-PCR. Mamm Genome. 1994 Nov;5(11):688-95
J:106743 Mouse Genome Informatics and NCBI UniSTS, UniSTS load for MIT markers. Database Download. 2006;
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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06/12/2024
MGI 6.13 		The Jackson Laboratory