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Mouse SNP Summary
Symbol
Name
ID 		Sox5os3
SRY (sex determining region Y)-box 5, opposite strand 3
MGI:1914010

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Showing SNP(s) 1 - 100 of 251

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3<tf>/J
C3H/HeJ
C57BL/6J
CAST/EiJ
CZECHII/EiJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
rs216042962
MGI SNP Detail		 Chr6:144616685 Rr139297 within coordinates of
Sox5 within coordinates of
Sox5it within coordinates of
Sox5os3 1909 bp upstream
 SNP A/G A G
rs37027498
MGI SNP Detail		 Chr6:144616690 Rr139297 within coordinates of
Sox5 within coordinates of
Sox5it within coordinates of
Sox5os3 1904 bp upstream
 SNP A/G G G A G A A A A A G G
rs36889544
MGI SNP Detail		 Chr6:144616819 Sox5 within coordinates of
Sox5it within coordinates of
Sox5os3 1775 bp upstream
 SNP A/G G G A G A A A A G G G G
rs213524227
MGI SNP Detail		 Chr6:144616938 Sox5 within coordinates of
Sox5it within coordinates of
Sox5os3 1656 bp upstream
 SNP G/T T G
rs37333532
MGI SNP Detail		 Chr6:144616978 Sox5 within coordinates of
Sox5it within coordinates of
Sox5os3 1616 bp upstream
 SNP A/G A A G A A G G A A A
rs38805147
MGI SNP Detail		 Chr6:144617061 Rr139298 within coordinates of
Sox5 within coordinates of
Sox5it within coordinates of
Sox5os3 1533 bp upstream
 SNP A/G A A G A G G G A A
rs260845973
MGI SNP Detail		 Chr6:144617246 Sox5 within coordinates of
Sox5it within coordinates of
Sox5os3 1348 bp upstream
 SNP A/T T A
rs37276532
MGI SNP Detail		 Chr6:144617268 Sox5 within coordinates of
Sox5it within coordinates of
Sox5os3 1326 bp upstream
 SNP C/G C C G C G G G G G C G C
rs241644865
MGI SNP Detail		 Chr6:144617354 Sox5 within coordinates of
Sox5it within coordinates of
Sox5os3 1240 bp upstream
 SNP A/G A G
rs37363183
MGI SNP Detail		 Chr6:144617476 Sox5 within coordinates of
Sox5it within coordinates of
Sox5os3 1118 bp upstream
 SNP C/T C C T C T T T T C T
rs253406420
MGI SNP Detail		 Chr6:144617477 Sox5 within coordinates of
Sox5it within coordinates of
Sox5os3 1117 bp upstream
 SNP A/G G A
rs220853720
MGI SNP Detail		 Chr6:144617488 Sox5 within coordinates of
Sox5it within coordinates of
Sox5os3 1106 bp upstream
 SNP C/T C T
rs239466506
MGI SNP Detail		 Chr6:144617527 Sox5 within coordinates of
Sox5it within coordinates of
Sox5os3 1067 bp upstream
 SNP A/G G A
rs31004751
MGI SNP Detail		 Chr6:144617694 Sox5 within coordinates of
Sox5it within coordinates of
Sox5os3 900 bp upstream
 SNP C/T T T T C T C T C C C C T C T T
rs30474215
MGI SNP Detail		 Chr6:144617707 Sox5 within coordinates of
Sox5it within coordinates of
Sox5os3 887 bp upstream
 SNP C/T T T T C T C T C C C C T C T T
rs30117362
MGI SNP Detail		 Chr6:144617770 Sox5 within coordinates of
Sox5it within coordinates of
Sox5os3 824 bp upstream
 SNP C/T C C C T C T C T T T C C C C
rs30852356
MGI SNP Detail		 Chr6:144617793 Sox5 within coordinates of
Sox5it within coordinates of
Sox5os3 801 bp upstream
 SNP C/T C C C T C T C T T T T C T C
rs30940766
MGI SNP Detail		 Chr6:144617855 Sox5 within coordinates of
Sox5it within coordinates of
Sox5os3 739 bp upstream
 SNP G/T T T T G T G T G G G G T G G
rs30267459
MGI SNP Detail		 Chr6:144617987 Sox5 within coordinates of
Sox5it within coordinates of
Sox5os3 607 bp upstream
 SNP A/C A A A A C C A
rs30511753
MGI SNP Detail		 Chr6:144617993 Sox5 within coordinates of
Sox5it within coordinates of
Sox5os3 601 bp upstream
 SNP A/G A A A A G G A
rs46475178
MGI SNP Detail		 Chr6:144618256 Sox5 within coordinates of
Sox5it within coordinates of
Sox5os3 338 bp upstream
 SNP A/C A A C C A
rs51692691
MGI SNP Detail		 Chr6:144618262 Sox5 within coordinates of
Sox5it within coordinates of
Sox5os3 332 bp upstream
 SNP A/G G G A A G
rs262320231
MGI SNP Detail		 Chr6:144618313 Sox5 within coordinates of
Sox5it within coordinates of
Sox5os3 281 bp upstream
 SNP C/T C T
rs229044473
MGI SNP Detail		 Chr6:144618319 Sox5 within coordinates of
Sox5it within coordinates of
Sox5os3 275 bp upstream
 SNP A/G G A
rs36342669
MGI SNP Detail		 Chr6:144618392 Sox5 within coordinates of
Sox5it within coordinates of
Sox5os3 202 bp upstream
 SNP A/G G G A G A A A A A G A G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3<tf>/J
C3H/HeJ
C57BL/6J
CAST/EiJ
CZECHII/EiJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
rs219007893
MGI SNP Detail		 Chr6:144618495 Sox5 within coordinates of
Sox5os3 99 bp upstream
 SNP C/T C T
rs239462783
MGI SNP Detail		 Chr6:144618501 Sox5 within coordinates of
Sox5os3 93 bp upstream
 SNP A/G A G
rs246993136
MGI SNP Detail		 Chr6:144618629 Sox5 within coordinates of
Sox5os3 within coordinates of
 SNP A/G A G
rs214837621
MGI SNP Detail		 Chr6:144618646 Sox5 within coordinates of
Sox5os3 within coordinates of
 SNP A/G G A
rs36463303
MGI SNP Detail		 Chr6:144618676 Sox5 within coordinates of
Sox5os3 within coordinates of
 SNP A/T A T T A A
rs250978481
MGI SNP Detail		 Chr6:144618684 Sox5 within coordinates of
Sox5os3 within coordinates of
 SNP C/G G C
rs222842050
MGI SNP Detail		 Chr6:144618783 Sox5 within coordinates of
Sox5os3 within coordinates of
 SNP A/G G A
rs36845784
MGI SNP Detail		 Chr6:144618818 Sox5 within coordinates of
Sox5os3 within coordinates of
 SNP C/T T T T C T C C C C T C T
rs47413050
MGI SNP Detail		 Chr6:144618852 Sox5 within coordinates of
Sox5os3 within coordinates of
 SNP C/T C C T T C
rs52264919
MGI SNP Detail		 Chr6:144618854 Sox5 within coordinates of
Sox5os3 within coordinates of
 SNP C/T T T C C T
rs45785222
MGI SNP Detail		 Chr6:144618943 Sox5 within coordinates of
Sox5os3 within coordinates of
 SNP C/G C C G G C
rs258214652
MGI SNP Detail		 Chr6:144618953 Sox5 within coordinates of
Sox5os3 within coordinates of
 SNP A/G A G
rs37179035
MGI SNP Detail		 Chr6:144618986 Sox5 within coordinates of
Sox5os3 within coordinates of
 SNP A/G G G G A G A A A A A G A A
rs108183200
MGI SNP Detail		 Chr6:144619112 Sox5 within coordinates of
Sox5os3 within coordinates of
 SNP A/G A A G G A
rs107794497
MGI SNP Detail		 Chr6:144619168 Sox5 within coordinates of
Sox5os3 within coordinates of
 SNP C/T T T C C T
rs107651631
MGI SNP Detail		 Chr6:144619187 Sox5 within coordinates of
Sox5os3 within coordinates of
 SNP A/G A A G G A
rs252450684
MGI SNP Detail		 Chr6:144619353 Sox5 within coordinates of
Sox5os3 within coordinates of
 SNP A/G A G
rs49111111
MGI SNP Detail		 Chr6:144619411 Sox5 within coordinates of
Sox5os3 within coordinates of
 SNP C/G C C G G C
rs37536914
MGI SNP Detail		 Chr6:144619456 Sox5 within coordinates of
Sox5os3 within coordinates of
 SNP A/T T A A A A A A
rs38491939
MGI SNP Detail		 Chr6:144619471 Sox5 within coordinates of
Sox5os3 within coordinates of
 SNP C/T C C C T C T T T T T T C T C C
rs30761760
MGI SNP Detail		 Chr6:144619782 Rr143322 within coordinates of
Sox5 within coordinates of
Sox5os3 within coordinates of
 SNP A/G A A A G G A
rs37826079
MGI SNP Detail		 Chr6:144619829 Rr143322 within coordinates of
Sox5 within coordinates of
Sox5os3 within coordinates of
 SNP A/G G G G A G A A G A A A G A G
rs37045990
MGI SNP Detail		 Chr6:144619952 Rr143322 within coordinates of
Sox5 within coordinates of
Sox5os3 within coordinates of
 SNP A/G A A A G A G G A G G G A G A A
rs47000714
MGI SNP Detail		 Chr6:144620057 Sox5 within coordinates of
Sox5os3 within coordinates of
 SNP C/T C C T T C
rs213033262
MGI SNP Detail		 Chr6:144620070 Sox5 within coordinates of
Sox5os3 within coordinates of
 SNP A/T T A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3<tf>/J
C3H/HeJ
C57BL/6J
CAST/EiJ
CZECHII/EiJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
rs37260069
MGI SNP Detail		 Chr6:144620246 Sox5 within coordinates of
Sox5os3 within coordinates of
 SNP A/G G G A G A A A A G G G
rs108166500
MGI SNP Detail		 Chr6:144620281 Sox5 within coordinates of
Sox5os3 within coordinates of
 SNP A/C A A C C A
rs227012640
MGI SNP Detail		 Chr6:144620416 Rr139299 within coordinates of
Sox5 within coordinates of
Sox5os3 within coordinates of
 SNP C/T C T
rs234773040
MGI SNP Detail		 Chr6:144620421 Rr139299 within coordinates of
Sox5 within coordinates of
Sox5os3 within coordinates of
 SNP C/T C T
rs50703709
MGI SNP Detail		 Chr6:144620457 Rr139299 within coordinates of
Sox5 within coordinates of
Sox5os3 within coordinates of
 SNP A/G G G A A G
rs51405049
MGI SNP Detail		 Chr6:144620506 Rr139299 within coordinates of
Sox5 within coordinates of
Sox5os3 within coordinates of
 SNP A/G A A G G A
rs51781726
MGI SNP Detail		 Chr6:144620508 Rr139299 within coordinates of
Sox5 within coordinates of
Sox5os3 within coordinates of
 SNP A/G G G A A G
rs49896940
MGI SNP Detail		 Chr6:144620592 Rr139299 within coordinates of
Sox5 within coordinates of
Sox5os3 within coordinates of
 SNP A/T T T A A T
rs52286275
MGI SNP Detail		 Chr6:144620645 Rr139299 within coordinates of
Sox5 within coordinates of
Sox5os3 within coordinates of
 SNP C/T C C T T C
rs52562949
MGI SNP Detail		 Chr6:144620722 Rr139299 within coordinates of
Sox5 within coordinates of
Sox5os3 within coordinates of
 SNP A/T T T A A T
rs52322251
MGI SNP Detail		 Chr6:144620739 Rr139299 within coordinates of
Sox5 within coordinates of
Sox5os3 within coordinates of
 SNP A/G A A G G A
rs50314992
MGI SNP Detail		 Chr6:144620769 Rr139299 within coordinates of
Sox5 within coordinates of
Sox5os3 within coordinates of
 SNP A/G A A G G A
rs36376783
MGI SNP Detail		 Chr6:144620822 Sox5 within coordinates of
Sox5os3 within coordinates of
 SNP C/T C C C T C T T T T T T C T
rs36645496
MGI SNP Detail		 Chr6:144620855 Sox5 within coordinates of
Sox5os3 within coordinates of
 SNP A/G A A G A G G G G G A A
rs226530021
MGI SNP Detail		 Chr6:144620877 Sox5 within coordinates of
Sox5os3 within coordinates of
 SNP C/T C T
rs50870744
MGI SNP Detail		 Chr6:144620886 Sox5 within coordinates of
Sox5os3 within coordinates of
 SNP C/G G G C
rs48630005
MGI SNP Detail		 Chr6:144620895 Sox5 within coordinates of
Sox5os3 within coordinates of
 SNP A/T T T A A T
rs39004755
MGI SNP Detail		 Chr6:144620924 Sox5 within coordinates of
Sox5os3 within coordinates of
 SNP A/G A A G A G G G G G A G A
rs51212481
MGI SNP Detail		 Chr6:144621004 Rr148311 within coordinates of
Sox5 within coordinates of
Sox5os3 within coordinates of
 SNP C/T C C T T C
rs37284151
MGI SNP Detail		 Chr6:144621040 Rr148311 within coordinates of
Sox5 within coordinates of
Sox5os3 within coordinates of
 SNP G/T G G G T G T T T T T G T G
rs38243568
MGI SNP Detail		 Chr6:144621097 Rr148311 within coordinates of
Sox5 within coordinates of
Sox5os3 within coordinates of
 SNP A/G G G G A G A A A A A A G A G G
rs46127806
MGI SNP Detail		 Chr6:144621203 Sox5 within coordinates of
Sox5os3 within coordinates of
 SNP C/T C C T T C
rs48759463
MGI SNP Detail		 Chr6:144621269 Sox5 within coordinates of
Sox5os3 within coordinates of
 SNP C/G G C C G
rs46203254
MGI SNP Detail		 Chr6:144621299 Sox5 within coordinates of
Sox5os3 within coordinates of
 SNP A/G A G G A
rs36291353
MGI SNP Detail		 Chr6:144621345 Sox5 within coordinates of
Sox5os3 within coordinates of
 SNP C/T T T C T C C C C C C C T C T
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3<tf>/J
C3H/HeJ
C57BL/6J
CAST/EiJ
CZECHII/EiJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
SM/J
WSB/EiJ
rs48979762
MGI SNP Detail		 Chr6:144621416 Sox5 within coordinates of
Sox5os3 within coordinates of
 SNP A/G G A A G
rs48527529
MGI SNP Detail		 Chr6:144621427 Sox5 within coordinates of
Sox5os3 within coordinates of
 SNP C/T T C C T
rs52475791
MGI SNP Detail		 Chr6:144621477 Sox5 within coordinates of
Sox5os3 within coordinates of
 SNP C/T T C C T
rs52186439
MGI SNP Detail		 Chr6:144621495 Sox5 within coordinates of
Sox5os3 within coordinates of
 SNP C/T T C C T
rs52442769
MGI SNP Detail		 Chr6:144621535 Sox5 within coordinates of
Sox5os3 within coordinates of
 SNP G/T G T T G
rs52283112
MGI SNP Detail		 Chr6:144621556 Sox5 within coordinates of
Sox5os3 within coordinates of
 SNP C/T C T T C
rs37936264
MGI SNP Detail		 Chr6:144621678 Sox5 within coordinates of
Sox5os3 within coordinates of
 SNP A/G A A G A G G G G G A G A
rs36425290
MGI SNP Detail		 Chr6:144622200 Sox5 within coordinates of
Sox5os3 within coordinates of
 SNP A/G A A A G A G G G G G G A G A A
rs38475779
MGI SNP Detail		 Chr6:144622302 Sox5 within coordinates of
Sox5os3 within coordinates of
 SNP A/G G G A G A A A A A A G A G G
rs37207705
MGI SNP Detail		 Chr6:144622340 Sox5 within coordinates of
Sox5os3 within coordinates of
 SNP C/G G C G C G G G C G G C
rs30222937
MGI SNP Detail		 Chr6:144622378 Sox5 within coordinates of
Sox5os3 within coordinates of
 SNP A/G A A A G G A
rs259912267
MGI SNP Detail		 Chr6:144622652 Rr148312 within coordinates of
Sox5 within coordinates of
Sox5os3 within coordinates of
 SNP A/G A G
rs216419927
MGI SNP Detail		 Chr6:144622679 Rr148312 within coordinates of
Sox5 within coordinates of
Sox5os3 within coordinates of
 SNP C/T C T
rs37929736
MGI SNP Detail		 Chr6:144622713 Rr148312 within coordinates of
Sox5 within coordinates of
Sox5os3 within coordinates of
 SNP A/G G G A G G A A G A A A G G A G G
rs37820595
MGI SNP Detail		 Chr6:144622755 Rr148312 within coordinates of
Sox5 within coordinates of
Sox5os3 within coordinates of
 SNP C/T C C T C C T C T C T T T C C T C C
rs29935042
MGI SNP Detail		 Chr6:144622826 Rr148312 within coordinates of
Sox5 within coordinates of
Sox5os3 within coordinates of
 SNP C/G C C C G C ? G C C G C G G G C C G C C
rs30328080
MGI SNP Detail		 Chr6:144622869 Rr148312 within coordinates of
Sox5 within coordinates of
Sox5os3 within coordinates of
 SNP C/T T T T C T T C T T C T C C C T T C T T
rs49318801
MGI SNP Detail		 Chr6:144623143 Rr148312 within coordinates of
Rr400037 within coordinates of
Sox5 within coordinates of
Sox5os3 within coordinates of
 SNP G/T G G G G G G G G G G T G G G
rs49219057
MGI SNP Detail		 Chr6:144623233 Rr148312 within coordinates of
Rr400037 within coordinates of
Sox5 within coordinates of
Sox5os3 within coordinates of
 SNP C/T C C C C C C C C C C C C C T C
rs51933348
MGI SNP Detail		 Chr6:144623334 Rr148312 within coordinates of
Rr400037 within coordinates of
Sox5 within coordinates of
Sox5os3 within coordinates of
 SNP C/T T T T C T T C T C T C C C T T C T T
rs50129049
MGI SNP Detail		 Chr6:144623413 Rr148312 within coordinates of
Sox5 within coordinates of
Sox5os3 within coordinates of
 SNP C/T C C C T C C T T C T T T C C T C C
rs29926490
MGI SNP Detail		 Chr6:144623520 Rr148312 within coordinates of
Sox5 within coordinates of
Sox5os3 within coordinates of
 SNP A/T A A A T A A T A A T A T T T A A T A A
rs29969838
MGI SNP Detail		 Chr6:144623692 Rr148312 within coordinates of
Sox5 within coordinates of
Sox5os3 within coordinates of
 SNP A/G A A A G A A G A A G A G G G A A G A A
rs222897553
MGI SNP Detail		 Chr6:144624593 Rr148312 within coordinates of
Sox5 within coordinates of
Sox5os3 within coordinates of
 SNP C/T C T
rs3705745
MGI SNP Detail		 Chr6:144624692 Rr148312 within coordinates of
Sox5 within coordinates of
Sox5os3 within coordinates of
 SNP A/G A A A G A A G A G A G G G A G A A
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Showing SNP(s) 1 - 100 of 251
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Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory
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