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Mouse SNP Summary
Symbol
Name
ID 		Gtf3c2
general transcription factor IIIC, polypeptide 2, beta
MGI:1919002

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129/Sv
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs250704895
MGI SNP Detail
Alliance Variant		 Chr5:31311424 Gm29609 Intron
Gm29609 Noncoding-Transcript-Variant
Gtf3c2 1926 bp downstream
Mpv17 Intron
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs219183156
MGI SNP Detail
Alliance Variant		 Chr5:31311483 Cpgi15702 within coordinates of
Gm29609 Intron
Gm29609 Noncoding-Transcript-Variant
Gtf3c2 1867 bp downstream
Mpv17 Intron
Mpv17 mRNA-UTR
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs246159903
MGI SNP Detail
Alliance Variant		 Chr5:31311514 Cpgi15702 within coordinates of
Gm29609 Intron
Gm29609 Noncoding-Transcript-Variant
Gtf3c2 1836 bp downstream
Mpv17 Intron
Mpv17 mRNA-UTR
Rr609156 within coordinates of
 SNP A/C A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A C A A A A A A A A A A A A A A C A A A A
rs32441006
MGI SNP Detail
Alliance Variant		 Chr5:31311524 Cpgi15702 within coordinates of
Gm29609 Intron
Gm29609 Noncoding-Transcript-Variant
Gtf3c2 1826 bp downstream
Mpv17 Intron
Mpv17 mRNA-UTR
Rr609156 within coordinates of
 SNP C/T C C C C C C C C C T C C C C
rs32440293
MGI SNP Detail
Alliance Variant		 Chr5:31311633 Cpgi15702 within coordinates of
Gm29609 Coding-NonSynonymous
Gm29609 Noncoding-Transcript-Variant
Gm29609 Splice-Site
Gm73522 within coordinates of
Gtf3c2 1717 bp downstream
Rr609157 within coordinates of
 SNP C/G G G G G G G G G G G G G C G
rs249720747
MGI SNP Detail
Alliance Variant		 Chr5:31311698 Cpgi15702 within coordinates of
Gm29609 Intron
Gm29609 Noncoding-Transcript-Variant
Gm73522 within coordinates of
Gtf3c2 1652 bp downstream
Rr609157 within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs32440290
MGI SNP Detail
Alliance Variant		 Chr5:31311761 Cpgi15702 within coordinates of
Gm29609 Intron
Gm29609 Noncoding-Transcript-Variant
Gm73522 within coordinates of
Gtf3c2 1589 bp downstream
Rr609157 within coordinates of
 SNP C/G C C C C C C C C C C C C G C
rs224151889
MGI SNP Detail
Alliance Variant		 Chr5:31311774 Cpgi15702 within coordinates of
Gm29609 Intron
Gm29609 Noncoding-Transcript-Variant
Gm73522 within coordinates of
Gtf3c2 1576 bp downstream
Rr609157 within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs32440287
MGI SNP Detail
Alliance Variant		 Chr5:31311775 Cpgi15702 within coordinates of
Gm29609 Intron
Gm29609 Noncoding-Transcript-Variant
Gm73522 within coordinates of
Gtf3c2 1575 bp downstream
Rr609157 within coordinates of
 SNP A/G A A A A A G A A A G A A A
rs213490862
MGI SNP Detail
Alliance Variant		 Chr5:31311783 Cpgi15702 within coordinates of
Gm29609 Intron
Gm29609 Noncoding-Transcript-Variant
Gm73522 within coordinates of
Gtf3c2 1567 bp downstream
Rr609157 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs232933782
MGI SNP Detail
Alliance Variant		 Chr5:31311826 Gm29609 Intron
Gm29609 Noncoding-Transcript-Variant
Gm73522 within coordinates of
Gtf3c2 1524 bp downstream
Rr609157 within coordinates of
 SNP A/C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs253372854
MGI SNP Detail
Alliance Variant		 Chr5:31311918 Gm29609 Intron
Gm29609 Noncoding-Transcript-Variant
Gm73522 within coordinates of
Gtf3c2 1432 bp downstream
Rr609157 within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs216364474
MGI SNP Detail
Alliance Variant		 Chr5:31311941 Gm29609 Intron
Gm29609 Noncoding-Transcript-Variant
Gm73522 within coordinates of
Gtf3c2 1409 bp downstream
Rr609157 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs240421096
MGI SNP Detail
Alliance Variant		 Chr5:31312111 Gm29609 Intron
Gm29609 Noncoding-Transcript-Variant
Gm73522 within coordinates of
Gtf3c2 1239 bp downstream
Rr609157 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs246743400
MGI SNP Detail
Alliance Variant		 Chr5:31312116 Gm29609 Intron
Gm29609 Noncoding-Transcript-Variant
Gm73522 within coordinates of
Gtf3c2 1234 bp downstream
Rr609157 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs213268816
MGI SNP Detail
Alliance Variant		 Chr5:31312164 Gm29609 Intron
Gm29609 Noncoding-Transcript-Variant
Gm73522 within coordinates of
Gtf3c2 1186 bp downstream
Rr609157 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs230297199
MGI SNP Detail
Alliance Variant		 Chr5:31312185 Gm29609 Intron
Gm29609 Noncoding-Transcript-Variant
Gm73522 within coordinates of
Gtf3c2 1165 bp downstream
Rr609157 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs250841198
MGI SNP Detail
Alliance Variant		 Chr5:31312225 Gm29609 Intron
Gm29609 Noncoding-Transcript-Variant
Gm73522 within coordinates of
Gtf3c2 1125 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C C C C C T C C C C C C C T C C C C
rs222871028
MGI SNP Detail
Alliance Variant		 Chr5:31312227 Gm29609 Intron
Gm29609 Noncoding-Transcript-Variant
Gm73522 within coordinates of
Gtf3c2 1123 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A G
rs241414445
MGI SNP Detail
Alliance Variant		 Chr5:31312247 Gm29609 Intron
Gm29609 Noncoding-Transcript-Variant
Gm73522 within coordinates of
Gtf3c2 1103 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs258451757
MGI SNP Detail
Alliance Variant		 Chr5:31312267 Gm29609 Intron
Gm29609 Noncoding-Transcript-Variant
Gm73522 within coordinates of
Gtf3c2 1083 bp downstream
 SNP A/T A A A A A A A A A A A A A A A A A A A T A A T A A A A T A A A A A T A A A A A A T A A A A A A A T A A A T
rs226844638
MGI SNP Detail
Alliance Variant		 Chr5:31312292 Gm29609 Intron
Gm29609 Noncoding-Transcript-Variant
Gm73522 within coordinates of
Gtf3c2 1058 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs246997673
MGI SNP Detail
Alliance Variant		 Chr5:31312298 Gm29609 Intron
Gm29609 Noncoding-Transcript-Variant
Gm73522 within coordinates of
Gtf3c2 1052 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs256433075
MGI SNP Detail
Alliance Variant		 Chr5:31312314 Gm29609 Intron
Gm29609 Noncoding-Transcript-Variant
Gm73522 within coordinates of
Gtf3c2 1036 bp downstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T C
rs218140780
MGI SNP Detail
Alliance Variant		 Chr5:31312346 Gm29609 Intron
Gm29609 Noncoding-Transcript-Variant
Gm73522 within coordinates of
Gtf3c2 1004 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129/Sv
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs239734406
MGI SNP Detail
Alliance Variant		 Chr5:31312376 Gm29609 Intron
Gm29609 Noncoding-Transcript-Variant
Gm73522 within coordinates of
Gtf3c2 974 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs582219809
MGI SNP Detail
Alliance Variant		 Chr5:31312429 Gm29609 Intron
Gm29609 Noncoding-Transcript-Variant
Gm73522 within coordinates of
Gtf3c2 921 bp downstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs257510055
MGI SNP Detail
Alliance Variant		 Chr5:31312443 Gm29609 Intron
Gm29609 Noncoding-Transcript-Variant
Gm73522 within coordinates of
Gtf3c2 907 bp downstream
 SNP C/G/T T T T T T T T T T T T T T T T T T T T T T T G T T T T G T T T T T T T T T T T T G T T T T T T T C T T T T
rs232290236
MGI SNP Detail
Alliance Variant		 Chr5:31312535 Gm29609 Intron
Gm29609 Noncoding-Transcript-Variant
Gm73522 within coordinates of
Gtf3c2 815 bp downstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T G T T T T G T T T T T T T T T T T T G T T T T T T T T T T T T
rs257072116
MGI SNP Detail
Alliance Variant		 Chr5:31312594 Gm29609 Intron
Gm29609 Noncoding-Transcript-Variant
Gm73522 within coordinates of
Gtf3c2 756 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A
rs263279145
MGI SNP Detail
Alliance Variant		 Chr5:31312662 Gm29609 Intron
Gm29609 Noncoding-Transcript-Variant
Gm73522 within coordinates of
Gtf3c2 688 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs235115178
MGI SNP Detail
Alliance Variant		 Chr5:31312663 Gm29609 Intron
Gm29609 Noncoding-Transcript-Variant
Gm73522 within coordinates of
Gtf3c2 687 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs246769650
MGI SNP Detail
Alliance Variant		 Chr5:31312709 Gm29609 Intron
Gm29609 Noncoding-Transcript-Variant
Gm73522 within coordinates of
Gtf3c2 641 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs32440284
MGI SNP Detail
Alliance Variant		 Chr5:31312737 Gm29609 Intron
Gm29609 Noncoding-Transcript-Variant
Gm73522 within coordinates of
Gtf3c2 613 bp downstream
 SNP C/G C C C C C C C C C C C C G C
rs230052045
MGI SNP Detail
Alliance Variant		 Chr5:31312821 Gm29609 Intron
Gm29609 Noncoding-Transcript-Variant
Gm73522 within coordinates of
Gtf3c2 529 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs32444890
MGI SNP Detail
Alliance Variant		 Chr5:31312884 Gm29609 Intron
Gm29609 Noncoding-Transcript-Variant
Gm73522 within coordinates of
Gtf3c2 466 bp downstream
 SNP C/T C C C C C C C C C T C T C
rs214610326
MGI SNP Detail
Alliance Variant		 Chr5:31312923 Gm29609 Intron
Gm29609 Noncoding-Transcript-Variant
Gm73522 within coordinates of
Gtf3c2 427 bp downstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs238980587
MGI SNP Detail
Alliance Variant		 Chr5:31312940 Gm29609 Intron
Gm29609 Noncoding-Transcript-Variant
Gm73522 within coordinates of
Gtf3c2 410 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs263032363
MGI SNP Detail
Alliance Variant		 Chr5:31312944 Gm29609 Intron
Gm29609 Noncoding-Transcript-Variant
Gm73522 within coordinates of
Gtf3c2 406 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs226446888
MGI SNP Detail
Alliance Variant		 Chr5:31312957 Gm29609 Intron
Gm29609 Noncoding-Transcript-Variant
Gm73522 within coordinates of
Gtf3c2 393 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs235311941
MGI SNP Detail
Alliance Variant		 Chr5:31313053 Gm29609 Intron
Gm29609 Noncoding-Transcript-Variant
Gm73522 within coordinates of
Gtf3c2 297 bp downstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C
rs250198470
MGI SNP Detail
Alliance Variant		 Chr5:31313061 Gm29609 Intron
Gm29609 Noncoding-Transcript-Variant
Gm73522 within coordinates of
Gtf3c2 289 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs217899450
MGI SNP Detail
Alliance Variant		 Chr5:31313100 Gm29609 Intron
Gm29609 Noncoding-Transcript-Variant
Gm73522 within coordinates of
Gtf3c2 250 bp downstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs32444887
MGI SNP Detail
Alliance Variant		 Chr5:31313121 Gm29609 Intron
Gm29609 Noncoding-Transcript-Variant
Gm73522 within coordinates of
Gtf3c2 229 bp downstream
 SNP C/G G G G G G G G G G G G G G C G
rs262369606
MGI SNP Detail
Alliance Variant		 Chr5:31313155 Gm29609 Intron
Gm29609 Noncoding-Transcript-Variant
Gm73522 within coordinates of
Gtf3c2 195 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs225134627
MGI SNP Detail
Alliance Variant		 Chr5:31313210 Gm29609 Intron
Gm29609 Noncoding-Transcript-Variant
Gm73522 within coordinates of
Gtf3c2 140 bp downstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs245082646
MGI SNP Detail
Alliance Variant		 Chr5:31313211 Gm29609 Intron
Gm29609 Noncoding-Transcript-Variant
Gm73522 within coordinates of
Gtf3c2 139 bp downstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs586163458
MGI SNP Detail
Alliance Variant		 Chr5:31313239 Gm29609 Intron
Gm29609 Noncoding-Transcript-Variant
Gm73522 within coordinates of
Gtf3c2 111 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs580085750
MGI SNP Detail
Alliance Variant		 Chr5:31313240 Gm29609 Intron
Gm29609 Noncoding-Transcript-Variant
Gm73522 within coordinates of
Gtf3c2 110 bp downstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs266092062
MGI SNP Detail
Alliance Variant		 Chr5:31313282 Gm29609 Intron
Gm29609 Noncoding-Transcript-Variant
Gm73522 within coordinates of
Gtf3c2 68 bp downstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129/Sv
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs32444884
MGI SNP Detail
Alliance Variant		 Chr5:31313482 Gm29609 Intron
Gm29609 Noncoding-Transcript-Variant
Gm73522 within coordinates of
Gtf3c2 mRNA-UTR
 SNP A/T T T T T T T A
rs4225138
MGI SNP Detail
Alliance Variant		 Chr5:31313484 Gm29609 Intron
Gm29609 Noncoding-Transcript-Variant
Gm73522 within coordinates of
Gtf3c2 mRNA-UTR
 SNP C/G G G G G G C G C
rs246890706
MGI SNP Detail
Alliance Variant		 Chr5:31313601 Gm29609 Intron
Gm29609 Noncoding-Transcript-Variant
Gm73522 within coordinates of
Gtf3c2 mRNA-UTR
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C A C C C C A C C C C C C C C C C C C A C C C C C C C C C C C C
rs32444001
MGI SNP Detail
Alliance Variant		 Chr5:31313788 Gm29609 Intron
Gm29609 Noncoding-Transcript-Variant
Gm73522 within coordinates of
Gtf3c2 mRNA-UTR
 SNP C/T C C C C C C C C C C C C C T C
rs223588125
MGI SNP Detail
Alliance Variant		 Chr5:31314130 Gm29609 Intron
Gm29609 Noncoding-Transcript-Variant
Gm73522 within coordinates of
Gtf3c2 mRNA-UTR
 SNP A/T A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A A A A A A A A
rs244598956
MGI SNP Detail
Alliance Variant		 Chr5:31314137 Gm29609 Intron
Gm29609 Noncoding-Transcript-Variant
Gm73522 within coordinates of
Gtf3c2 mRNA-UTR
 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs13469147
MGI SNP Detail
Alliance Variant		 Chr5:31314198 Gm29609 Intron
Gm29609 Noncoding-Transcript-Variant
Gm73522 within coordinates of
Gtf3c2 mRNA-UTR
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs233511861
MGI SNP Detail
Alliance Variant		 Chr5:31314202 Gm29609 Intron
Gm29609 Noncoding-Transcript-Variant
Gm73522 within coordinates of
Gtf3c2 mRNA-UTR
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C
rs252565106
MGI SNP Detail
Alliance Variant		 Chr5:31314256 Gm29609 Intron
Gm29609 Noncoding-Transcript-Variant
Gm73522 within coordinates of
Gtf3c2 mRNA-UTR
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs219505895
MGI SNP Detail
Alliance Variant		 Chr5:31314313 Gm29609 Intron
Gm29609 Noncoding-Transcript-Variant
Gm73522 within coordinates of
Gtf3c2 mRNA-UTR
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs235814825
MGI SNP Detail
Alliance Variant		 Chr5:31314335 Gm29609 Intron
Gm29609 Noncoding-Transcript-Variant
Gm73522 within coordinates of
Gtf3c2 mRNA-UTR
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs250240819
MGI SNP Detail
Alliance Variant		 Chr5:31314466 Gm29609 Intron
Gm29609 Noncoding-Transcript-Variant
Gm73522 within coordinates of
Gtf3c2 mRNA-UTR
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs13469146
MGI SNP Detail
Alliance Variant		 Chr5:31314790 Gm29609 Intron
Gm29609 Noncoding-Transcript-Variant
Gm73522 within coordinates of
Gtf3c2 mRNA-UTR
 SNP A/G G G A G A G A G G A A A G G G G A
rs232428261
MGI SNP Detail
Alliance Variant		 Chr5:31315119 Gm29609 Intron
Gm29609 Noncoding-Transcript-Variant
Gm73522 within coordinates of
Gtf3c2 Intron
Gtf3c2 Splice-Site
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs261810372
MGI SNP Detail
Alliance Variant		 Chr5:31315191 Gm29609 Intron
Gm29609 Noncoding-Transcript-Variant
Gm73522 within coordinates of
Gtf3c2 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs583208984
MGI SNP Detail
Alliance Variant		 Chr5:31315238 Gm29609 Intron
Gm29609 Noncoding-Transcript-Variant
Gm73522 within coordinates of
Gtf3c2 Intron
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs586580530
MGI SNP Detail
Alliance Variant		 Chr5:31315239 Gm29609 Intron
Gm29609 Noncoding-Transcript-Variant
Gm73522 within coordinates of
Gtf3c2 Intron
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs49931990
MGI SNP Detail
Alliance Variant		 Chr5:31315320 Gm29609 Intron
Gm29609 Noncoding-Transcript-Variant
Gm73522 within coordinates of
Gtf3c2 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C C C C C C C C T C C C C C C C C C C C C
rs46237654
MGI SNP Detail
Alliance Variant		 Chr5:31315321 Gm29609 Intron
Gm29609 Noncoding-Transcript-Variant
Gm73522 within coordinates of
Gtf3c2 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C C C C C C C C T C C C C C C C C C C C C
rs32443996
MGI SNP Detail
Alliance Variant		 Chr5:31315339 Gm29609 Intron
Gm29609 Noncoding-Transcript-Variant
Gm73522 within coordinates of
Gtf3c2 Intron
 SNP A/G A A A A A A A A A A A A A G A
rs221894943
MGI SNP Detail
Alliance Variant		 Chr5:31315626 Gm29609 Intron
Gm73522 within coordinates of
Gtf3c2 Intron
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T C T T T T T T T T T T T T T T C T T T T
rs236544386
MGI SNP Detail
Alliance Variant		 Chr5:31316014 Gm29609 Intron
Gm73522 within coordinates of
Gtf3c2 Intron
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs254792868
MGI SNP Detail
Alliance Variant		 Chr5:31316016 Gm29609 Intron
Gm73522 within coordinates of
Gtf3c2 Intron
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs32443163
MGI SNP Detail
Alliance Variant		 Chr5:31316054 Gm29609 Intron
Gm73522 within coordinates of
Gtf3c2 Intron
 SNP A/T T T T T T T A T T T A T T T T
rs244222282
MGI SNP Detail
Alliance Variant		 Chr5:31316112 Gm29609 Intron
Gm73522 within coordinates of
Gtf3c2 Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129/Sv
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs32443160
MGI SNP Detail
Alliance Variant		 Chr5:31316161 Gm29609 Intron
Gm73522 within coordinates of
Gtf3c2 Intron
 SNP A/G G G G G G G G G G G G G G A G
rs232451603
MGI SNP Detail
Alliance Variant		 Chr5:31316201 Gm29609 Intron
Gm73522 within coordinates of
Gtf3c2 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C C C C C C C C T C C C C C C C C C C C C
rs257789344
MGI SNP Detail
Alliance Variant		 Chr5:31316224 Gm29609 Intron
Gm73522 within coordinates of
Gtf3c2 Intron
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs32443157
MGI SNP Detail
Alliance Variant		 Chr5:31316315 Gm29609 Intron
Gm73522 within coordinates of
Gtf3c2 Intron
 SNP A/G A A A A A A G A A A G A A A A
rs32443154
MGI SNP Detail
Alliance Variant		 Chr5:31316345 Gm29609 Intron
Gm73522 within coordinates of
Gtf3c2 Intron
 SNP C/T C C C C C C C C C C C C C T C
rs244515739
MGI SNP Detail
Alliance Variant		 Chr5:31316375 Gm29609 Intron
Gm73522 within coordinates of
Gtf3c2 Intron
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs50015471
MGI SNP Detail
Alliance Variant		 Chr5:31316917 Gm29609 Intron
Gm73522 within coordinates of
Gtf3c2 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C C C C C T C C C C C C C T C C C C
rs46210895
MGI SNP Detail
Alliance Variant		 Chr5:31316988 Gm29609 Intron
Gm73522 within coordinates of
Gtf3c2 Intron
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs47309815
MGI SNP Detail
Alliance Variant		 Chr5:31316995 Gm29609 Intron
Gm73522 within coordinates of
Gtf3c2 Intron
 SNP C C C
rs49281770
MGI SNP Detail
Alliance Variant		 Chr5:31317002 Gm29609 Intron
Gm73522 within coordinates of
Gtf3c2 Intron
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A G A A A A
rs237527591
MGI SNP Detail
Alliance Variant		 Chr5:31317178 Gm29609 Coding-Synonymous
Gm73522 within coordinates of
Gtf3c2 Coding-Synonymous
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs264218957
MGI SNP Detail
Alliance Variant		 Chr5:31317284 Gm29609 Intron
Gm29609 Splice-Site
Gm73522 within coordinates of
Gtf3c2 Intron
Gtf3c2 Splice-Site
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs221916957
MGI SNP Detail
Alliance Variant		 Chr5:31317455 Gm29609 Intron
Gm73522 within coordinates of
Gtf3c2 Intron
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs236582077
MGI SNP Detail
Alliance Variant		 Chr5:31317584 Gm29609 Intron
Gtf3c2 Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs248022827
MGI SNP Detail
Alliance Variant		 Chr5:31317642 Gm29609 Intron
Gtf3c2 Intron
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs32442451
MGI SNP Detail
Alliance Variant		 Chr5:31317656 Gm29609 Intron
Gtf3c2 Intron
 SNP A/T A A A A A A T A A A T A A T A
rs580040487
MGI SNP Detail
Alliance Variant		 Chr5:31317892 Gm29609 Intron
Gtf3c2 Intron
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G
rs247133740
MGI SNP Detail
Alliance Variant		 Chr5:31317893 Gm29609 Intron
Gtf3c2 Intron
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs233241301
MGI SNP Detail
Alliance Variant		 Chr5:31317919 Gm29609 Intron
Gtf3c2 Intron
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs245314476
MGI SNP Detail
Alliance Variant		 Chr5:31317937 Gm29609 Intron
Gtf3c2 Intron
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs261577371
MGI SNP Detail
Alliance Variant		 Chr5:31317952 Gm29609 Intron
Gtf3c2 Intron
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs228822706
MGI SNP Detail
Alliance Variant		 Chr5:31317953 Gm29609 Intron
Gtf3c2 Intron
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs244549150
MGI SNP Detail
Alliance Variant		 Chr5:31318007 Gm29609 Intron
Gtf3c2 Intron
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs256239509
MGI SNP Detail
Alliance Variant		 Chr5:31318057 Gm29609 Intron
Gtf3c2 Intron
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs226814067
MGI SNP Detail
Alliance Variant		 Chr5:31318085 Gm29609 Intron
Gtf3c2 Intron
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
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Showing SNP(s) 1 - 100 of 519
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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08/05/2025
MGI 6.24 		The Jackson Laboratory
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