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Mouse SNP Summary
Symbol
Name
ID
Supt3
SPT3, SAGA and STAGA complex component
MGI:1923723

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SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BLKS/J
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
DDK/Pas
FVB/NJ
I/LnJ
JF1/Ms
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MAI/Pas
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PERA/EiJ
PL/J
PWD/Ph
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SEG/Pas
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs245086350
MGI SNP Detail
Alliance Variant
Chr17:45086091 Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 1948 bp upstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C G C C C C G C C C C C G C G C C G C G C C C C C G C C C C C C
rs263432308
MGI SNP Detail
Alliance Variant
Chr17:45086103 Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 1936 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs225960682
MGI SNP Detail
Alliance Variant
Chr17:45086203 Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 1836 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs251680364
MGI SNP Detail
Alliance Variant
Chr17:45086240 Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 1799 bp upstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C
rs261554461
MGI SNP Detail
Alliance Variant
Chr17:45086242 Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 1797 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs47223306
MGI SNP Detail
Alliance Variant
Chr17:45086288 Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 1751 bp upstream
SNP C C C C C
rs237936203
MGI SNP Detail
Alliance Variant
Chr17:45086301 Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 1738 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C T C C T C T C C C C C T C C C C C C
rs256775716
MGI SNP Detail
Alliance Variant
Chr17:45086302 Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 1737 bp upstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A A C C C C C C C C C C C C C A C
rs227049001
MGI SNP Detail
Alliance Variant
Chr17:45086386 Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 1653 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A G A A G A G A A A A A G A G A A A A
rs33499097
MGI SNP Detail
Alliance Variant
Chr17:45086421 Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 1618 bp upstream
SNP C/T C T T T
rs218508450
MGI SNP Detail
Alliance Variant
Chr17:45086462 Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 1577 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G A G G G G G A G A A A A G A G G G G G A A G G A A
rs47265725
MGI SNP Detail
Alliance Variant
Chr17:45086616 Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 1423 bp upstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T G T T T T G T T T T T G T G T T G T G T T T T T G T G T T T T
rs51067443
MGI SNP Detail
Alliance Variant
Chr17:45086653 Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 1386 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C T C C T C T C C C C C T C C C C C C
rs230320428
MGI SNP Detail
Alliance Variant
Chr17:45086676 Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 1363 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A A G G G G G G G G G G G G G A A
rs251167104
MGI SNP Detail
Alliance Variant
Chr17:45086750 Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 1289 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs46709726
MGI SNP Detail
Alliance Variant
Chr17:45086797 Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 1242 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T C T T C T C T T T T T C T C T T T T
rs579615008
MGI SNP Detail
Alliance Variant
Chr17:45086902 Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 1137 bp upstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T G T T T T G T T T T T G T G T T G T G T T T T T G T T T T T T
rs582798856
MGI SNP Detail
Alliance Variant
Chr17:45086903 Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 1136 bp upstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A C A A A A C A A A A A C A C A A C A C A A A A A C A A A A A A
rs245510846
MGI SNP Detail
Alliance Variant
Chr17:45086937 Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 1102 bp upstream
SNP A/G G A
rs259321553
MGI SNP Detail
Alliance Variant
Chr17:45086960 Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 1079 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G A G G A G A G G G G G A G G G G G G
rs587063144
MGI SNP Detail
Alliance Variant
Chr17:45086985 Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 1054 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A
rs226094365
MGI SNP Detail
Alliance Variant
Chr17:45087005 Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 1034 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs240479688
MGI SNP Detail
Alliance Variant
Chr17:45087015 Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 1024 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A G A A G A G A A A A A G A A A A A A
rs248355528
MGI SNP Detail
Alliance Variant
Chr17:45087048 Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 991 bp upstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A C A A A A C A A A A A C A C A A C A C A A A A A C A C A A A A
rs218706061
MGI SNP Detail
Alliance Variant
Chr17:45087069 Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 970 bp upstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BLKS/J
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
DDK/Pas
FVB/NJ
I/LnJ
JF1/Ms
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MAI/Pas
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PERA/EiJ
PL/J
PWD/Ph
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SEG/Pas
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs237666496
MGI SNP Detail
Alliance Variant
Chr17:45087091 Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 948 bp upstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T G T T T T G T T T T T G T G T T G T G T T T T T G T G T T T T
rs581195364
MGI SNP Detail
Alliance Variant
Chr17:45087130 Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 909 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T C T T C T C T T T T T C T C T T T T
rs584615934
MGI SNP Detail
Alliance Variant
Chr17:45087136 Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 903 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G A G G A G A G G G G G A G G G G G G
rs108338641
MGI SNP Detail
Alliance Variant
Chr17:45087164 Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 875 bp upstream
SNP C/T T C
rs221086281
MGI SNP Detail
Alliance Variant
Chr17:45087165 Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 874 bp upstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C A C C C C A C C C C C C A C C A C A C C C C C A C C C C C C
rs249668935
MGI SNP Detail
Alliance Variant
Chr17:45087183 Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 856 bp upstream
SNP A/T A A A A A A A A A A A A A A A A A A A A A A T A A A A T A A A A A T A T A A T A T A A A A A T A T A A A A
rs264152449
MGI SNP Detail
Alliance Variant
Chr17:45087195 Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 844 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T T C T T C T C T T T T T C T C T T T T
rs235609579
MGI SNP Detail
Alliance Variant
Chr17:45087218 Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 821 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T C T T C T C T T T T T C T C T T T T
rs254461583
MGI SNP Detail
Alliance Variant
Chr17:45087227 Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 812 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs255830452
MGI SNP Detail
Alliance Variant
Chr17:45087247 Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 792 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G A G A G G A G A G G G G G A G A G G G G
rs223014351
MGI SNP Detail
Alliance Variant
Chr17:45087278 Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 761 bp upstream
SNP A/G G A
rs244707236
MGI SNP Detail
Alliance Variant
Chr17:45087313 Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 726 bp upstream
SNP G/T G G G G G G G G G G G G G G G G G G G G G T G G G G T G G G G G T G T G G T G T G G G G G T T G G G G
rs238320688
MGI SNP Detail
Alliance Variant
Chr17:45087367 Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 672 bp upstream
SNP A/G A G
rs256406368
MGI SNP Detail
Alliance Variant
Chr17:45087442 Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 597 bp upstream
SNP A/G A G
rs46489248
MGI SNP Detail
Alliance Variant
Chr17:45087481 Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 558 bp upstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A C A A A A C A A A A A C A C A A C A C A A A A A C A A A A A A
rs217800330
MGI SNP Detail
Alliance Variant
Chr17:45087502 Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 537 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs242926828
MGI SNP Detail
Alliance Variant
Chr17:45087568 Rr527303 within coordinates of
Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 471 bp upstream
SNP G/T T T T T T T T T T T T T T T T T T T T T T T G T T T T G T T T T T G T G T T G T G T T T T T G T G T T T T
rs248296349
MGI SNP Detail
Alliance Variant
Chr17:45087578 Rr527303 within coordinates of
Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 461 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs218818238
MGI SNP Detail
Alliance Variant
Chr17:45087586 Rr527303 within coordinates of
Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 453 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T C T T C T C T T T T T C T C T T T T
rs587410925
MGI SNP Detail
Alliance Variant
Chr17:45087606 Rr527303 within coordinates of
Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 433 bp upstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C A C C C C A C C C C C A C A C C A C A C C C C C A C A C C C C
rs581172355
MGI SNP Detail
Alliance Variant
Chr17:45087610 Rr527303 within coordinates of
Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 429 bp upstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs585213468
MGI SNP Detail
Alliance Variant
Chr17:45087615 Cpgi9179 within coordinates of
Rr527303 within coordinates of
Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 424 bp upstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C G C C C C G C C C C C G C G C C G C G C C C C C G C G C C C C
rs579167052
MGI SNP Detail
Alliance Variant
Chr17:45087630 Cpgi9179 within coordinates of
Rr527303 within coordinates of
Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 409 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G A G G A G A G G G G G A G A G G G G
rs231613086
MGI SNP Detail
Alliance Variant
Chr17:45087643 Cpgi9179 within coordinates of
Rr527303 within coordinates of
Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 396 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A G A A G A G A A A A A G A A A A A A
rs250543286
MGI SNP Detail
Alliance Variant
Chr17:45087655 Cpgi9179 within coordinates of
Rr527303 within coordinates of
Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 384 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A A G G G G G G G G G G G G G A A
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BLKS/J
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
DDK/Pas
FVB/NJ
I/LnJ
JF1/Ms
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MAI/Pas
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PERA/EiJ
PL/J
PWD/Ph
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SEG/Pas
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs224331327
MGI SNP Detail
Alliance Variant
Chr17:45087718 Cpgi9179 within coordinates of
Rr527303 within coordinates of
Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 321 bp upstream
SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs33212711
MGI SNP Detail
Alliance Variant
Chr17:45087762 Cpgi9179 within coordinates of
Rr527303 within coordinates of
Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 277 bp upstream
SNP A/G A A G G A G
rs266029124
MGI SNP Detail
Alliance Variant
Chr17:45087874 Cpgi9179 within coordinates of
Rr527303 within coordinates of
Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 165 bp upstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A C A A A A C A A A A A C A C A A C A C A A A A A C A A A A A A
rs33710296
MGI SNP Detail
Alliance Variant
Chr17:45087877 Cpgi9179 within coordinates of
Rr527303 within coordinates of
Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 162 bp upstream
SNP A/T T A T T A T
rs49118840
MGI SNP Detail
Alliance Variant
Chr17:45087895 Cpgi9179 within coordinates of
Rr527303 within coordinates of
Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 144 bp upstream
SNP A/C A A A A A A A A A A A A A A A A A A A A A A C A A A A C A A A A A C A C A A C A C A A A A A C A A A A A A
rs255779033
MGI SNP Detail
Alliance Variant
Chr17:45087927 Cpgi9179 within coordinates of
Rr527303 within coordinates of
Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 112 bp upstream
SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T C T T C T C T T T T T C C T T T T
rs581924277
MGI SNP Detail
Alliance Variant
Chr17:45087928 Cpgi9179 within coordinates of
Rr527303 within coordinates of
Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 111 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G A G G A G A G G G G G A G G G G G
rs224760042
MGI SNP Detail
Alliance Variant
Chr17:45087929 Cpgi9179 within coordinates of
Rr527303 within coordinates of
Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 110 bp upstream
SNP C/G/T C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C T C C C C C C G C C C C
rs33568053
MGI SNP Detail
Alliance Variant
Chr17:45087932 Cpgi9179 within coordinates of
Rr527303 within coordinates of
Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 107 bp upstream
SNP A/G A A G G A G
rs33048710
MGI SNP Detail
Alliance Variant
Chr17:45087939 Cpgi9179 within coordinates of
Rr527303 within coordinates of
Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 100 bp upstream
SNP C/G C G C C G C
rs231779793
MGI SNP Detail
Alliance Variant
Chr17:45087943 Cpgi9179 within coordinates of
Rr527303 within coordinates of
Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 96 bp upstream
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A A C C C C C C C C C C C C C A C
rs253118285
MGI SNP Detail
Alliance Variant
Chr17:45087944 Cpgi9179 within coordinates of
Rr527303 within coordinates of
Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 95 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A A G G G G G G G G G G G G G A G
rs218100819
MGI SNP Detail
Alliance Variant
Chr17:45087946 Cpgi9179 within coordinates of
Rr527303 within coordinates of
Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 93 bp upstream
SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G G C C C C C C C C C C C C C G C
rs240137832
MGI SNP Detail
Alliance Variant
Chr17:45087947 Cpgi9179 within coordinates of
Rr527303 within coordinates of
Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 92 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A A G G G G G G G G G G G G G A G
rs242192260
MGI SNP Detail
Alliance Variant
Chr17:45087959 Cpgi9179 within coordinates of
Rr527303 within coordinates of
Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 80 bp upstream
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs212805992
MGI SNP Detail
Alliance Variant
Chr17:45087974 Cpgi9179 within coordinates of
Rr527303 within coordinates of
Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 65 bp upstream
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
rs231557245
MGI SNP Detail
Alliance Variant
Chr17:45087995 Cpgi9179 within coordinates of
Rr527303 within coordinates of
Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 44 bp upstream
SNP A/G A A A A A A A A A A A A A A A A A A A A A A G A A A A G A A A A A G A G G G G A G A A A A A G A G A A G
rs250674179
MGI SNP Detail
Alliance Variant
Chr17:45088011 Cpgi9179 within coordinates of
Rr527303 within coordinates of
Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 mRNA-UTR
SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs215785954
MGI SNP Detail
Alliance Variant
Chr17:45088019 Cpgi9179 within coordinates of
Rr527303 within coordinates of
Rr527304 within coordinates of
Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 mRNA-UTR
Tssr144761 within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs241181528
MGI SNP Detail
Alliance Variant
Chr17:45088029 Cpgi9179 within coordinates of
Rr527303 within coordinates of
Rr527304 within coordinates of
Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 mRNA-UTR
Tssr144761 within coordinates of
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs49668939
MGI SNP Detail
Alliance Variant
Chr17:45088048 Cpgi9179 within coordinates of
Rr527303 within coordinates of
Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 mRNA-UTR
Tssr144761 within coordinates of
SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C T C C T C T C C C C C T C C C C C C
rs33284559
MGI SNP Detail
Alliance Variant
Chr17:45088078 Cpgi9179 within coordinates of
Rr527305 within coordinates of
Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 mRNA-UTR
Supt3 Noncoding-Transcript-Variant
Tssr144761 within coordinates of
SNP C/T T T C C T C
rs237686854
MGI SNP Detail
Alliance Variant
Chr17:45088086 Cpgi9179 within coordinates of
Rr527305 within coordinates of
Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 mRNA-UTR
Supt3 Noncoding-Transcript-Variant
SNP C/G C C C C C C C C C C C C C C C C C C C C C G C C C C G C C C C C C G C C G C G C C C C C G C G C C C C
rs250712625
MGI SNP Detail
Alliance Variant
Chr17:45088166 Cpgi9179 within coordinates of
Rr527305 within coordinates of
Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 mRNA-UTR
Supt3 Noncoding-Transcript-Variant
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs219834139
MGI SNP Detail
Alliance Variant
Chr17:45088186 Cpgi9179 within coordinates of
Rr527305 within coordinates of
Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 mRNA-UTR
Supt3 Noncoding-Transcript-Variant
Tssr144763 within coordinates of
SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T T C T C T T T T T C T C T T T T
SNP ID
(GRCm39)
Map Position
(GRCm39)
Gene & Category Variation
Type
Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BLKS/J
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
DDK/Pas
FVB/NJ
I/LnJ
JF1/Ms
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MAI/Pas
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PERA/EiJ
PL/J
PWD/Ph
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SEG/Pas
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs238605049
MGI SNP Detail
Alliance Variant
Chr17:45088249 Cpgi9179 within coordinates of
Rr527305 within coordinates of
Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 mRNA-UTR
Supt3 Noncoding-Transcript-Variant
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C
rs265231177
MGI SNP Detail
Alliance Variant
Chr17:45088492 Cpgi9179 within coordinates of
Rr527305 within coordinates of
Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 Intron
Supt3 Noncoding-Transcript-Variant
SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs231326306
MGI SNP Detail
Alliance Variant
Chr17:45088779 Rr527305 within coordinates of
Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 Intron
Supt3 Noncoding-Transcript-Variant
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs248531847
MGI SNP Detail
Alliance Variant
Chr17:45088806 Rr527305 within coordinates of
Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 Intron
Supt3 Noncoding-Transcript-Variant
SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs263883594
MGI SNP Detail
Alliance Variant
Chr17:45088838 Rr527305 within coordinates of
Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 Intron
Supt3 Noncoding-Transcript-Variant
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs234947887
MGI SNP Detail
Alliance Variant
Chr17:45088854 Rr527305 within coordinates of
Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 Intron
Supt3 Noncoding-Transcript-Variant
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs47386565
MGI SNP Detail
Alliance Variant
Chr17:45088910 Rr527305 within coordinates of
Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 Intron
Supt3 Noncoding-Transcript-Variant
SNP A/C A A A A A A A A A A A A A A A A A A A A A A C A A A A C A A A A A C A C A A C A C A A A A A C A A A A A A
rs51843840
MGI SNP Detail
Alliance Variant
Chr17:45088941 Rr527305 within coordinates of
Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 Intron
Supt3 Noncoding-Transcript-Variant
SNP A/T A A A A A A A A A A A A A A A A A A A A A A T A A A A T A A A A A T A T A A T A T A A A A A T A A A A A A
rs225171168
MGI SNP Detail
Alliance Variant
Chr17:45088983 Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 Intron
Supt3 Noncoding-Transcript-Variant
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G A G G A G A G G G G G A G G G G G G
rs48101591
MGI SNP Detail
Alliance Variant
Chr17:45089032 Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 Intron
Supt3 Noncoding-Transcript-Variant
SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T C T T T T T C T C T T C T C T T T T T C T T T T T
rs216388420
MGI SNP Detail
Alliance Variant
Chr17:45089101 Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 Intron
Supt3 Noncoding-Transcript-Variant
SNP A/C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C T C C C C C T C T C C T C T C C C C C T C A C C C C
rs33373002
MGI SNP Detail
Alliance Variant
Chr17:45089111 Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 Intron
Supt3 Noncoding-Transcript-Variant
SNP A/C A A C C A A
rs263790167
MGI SNP Detail
Alliance Variant
Chr17:45089183 Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 Intron
Supt3 Noncoding-Transcript-Variant
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs33058693
MGI SNP Detail
Alliance Variant
Chr17:45089207 Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 Intron
Supt3 Noncoding-Transcript-Variant
SNP C/T T T C C T C
rs230205172
MGI SNP Detail
Alliance Variant
Chr17:45089215 Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 Intron
Supt3 Noncoding-Transcript-Variant
SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G A G G A G A G G G G G A G A G G G G
rs250853660
MGI SNP Detail
Alliance Variant
Chr17:45089221 Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 Intron
Supt3 Noncoding-Transcript-Variant
SNP A/C A A A A A A A A A A A A A A A A A A A A A A C A A A A C A A A A A C A C A A C A C A A A A A C A C A A A A
rs51065310
MGI SNP Detail
Alliance Variant
Chr17:45089244 Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 Intron
Supt3 Noncoding-Transcript-Variant
SNP A/T T T T T T T T T T T T T T T T T T T T T T T A T T T T A T T T T T A T A T T A T A T T T T T A T A T T T T
rs6402116
MGI SNP Detail
Alliance Variant
Chr17:45089390 Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 Intron
Supt3 Noncoding-Transcript-Variant
SNP A/G G A
rs6402119
MGI SNP Detail
Alliance Variant
Chr17:45089393 Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 Intron
Supt3 Noncoding-Transcript-Variant
SNP A/G G A
rs223904326
MGI SNP Detail
Alliance Variant
Chr17:45089482 Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 Intron
Supt3 Noncoding-Transcript-Variant
SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs6402700
MGI SNP Detail
Alliance Variant
Chr17:45089495 Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 Intron
Supt3 Noncoding-Transcript-Variant
SNP A/T T A
rs265833717
MGI SNP Detail
Alliance Variant
Chr17:45089496 Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 Intron
Supt3 Noncoding-Transcript-Variant
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs228959815
MGI SNP Detail
Alliance Variant
Chr17:45089546 Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 Intron
Supt3 Noncoding-Transcript-Variant
SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs6402816
MGI SNP Detail
Alliance Variant
Chr17:45089564 Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 Intron
Supt3 Noncoding-Transcript-Variant
SNP A/G G A
rs254614266
MGI SNP Detail
Alliance Variant
Chr17:45089570 Runx2 Intron
Runx2 Noncoding-Transcript-Variant
Supt3 Intron
Supt3 Noncoding-Transcript-Variant
SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
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Showing SNP(s) 1 - 100 of 6550

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
08/05/2025
MGI 6.24
The Jackson Laboratory

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