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Mouse SNP Summary
Symbol
Name
ID 		Smpd4
sphingomyelin phosphodiesterase 4
MGI:1924876

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs225556004
MGI SNP Detail		 Chr16:17435282 Gm59742 within coordinates of
Rr391410 within coordinates of
Smpd4 1936 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs32333023
MGI SNP Detail		 Chr16:17435316 Gm59742 within coordinates of
Rr391410 within coordinates of
Smpd4 1902 bp upstream
 SNP A/G A A A A A A A A A G A A G A
rs258499015
MGI SNP Detail		 Chr16:17435317 Gm59742 within coordinates of
Rr391410 within coordinates of
Smpd4 1901 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs219756627
MGI SNP Detail		 Chr16:17435331 Gm59742 within coordinates of
Rr391410 within coordinates of
Smpd4 1887 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs238092956
MGI SNP Detail		 Chr16:17435391 Gm59742 within coordinates of
Rr391410 within coordinates of
Smpd4 1827 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs256112574
MGI SNP Detail		 Chr16:17435419 Gm59742 within coordinates of
Rr391410 within coordinates of
Smpd4 1799 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs224149855
MGI SNP Detail		 Chr16:17435428 Gm59742 within coordinates of
Rr391410 within coordinates of
Smpd4 1790 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs260187079
MGI SNP Detail		 Chr16:17435628 Gm59742 within coordinates of
Rr391410 within coordinates of
Smpd4 1590 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs264022331
MGI SNP Detail		 Chr16:17435648 Gm59742 within coordinates of
Rr391410 within coordinates of
Smpd4 1570 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs232915584
MGI SNP Detail		 Chr16:17435680 Gm59742 within coordinates of
Rr391410 within coordinates of
Smpd4 1538 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs252187420
MGI SNP Detail		 Chr16:17435683 Gm59742 within coordinates of
Rr391410 within coordinates of
Smpd4 1535 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs214178602
MGI SNP Detail		 Chr16:17435684 Gm59742 within coordinates of
Rr391410 within coordinates of
Smpd4 1534 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs582428143
MGI SNP Detail		 Chr16:17435725 Gm59742 within coordinates of
Rr391410 within coordinates of
Smpd4 1493 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs225037800
MGI SNP Detail		 Chr16:17435740 Gm59742 within coordinates of
Rr391410 within coordinates of
Smpd4 1478 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs586287107
MGI SNP Detail		 Chr16:17435755 Gm59742 within coordinates of
Rr391410 within coordinates of
Smpd4 1463 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs242722506
MGI SNP Detail		 Chr16:17435775 Gm59742 within coordinates of
Rr391410 within coordinates of
Smpd4 1443 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs211758311
MGI SNP Detail		 Chr16:17435786 Gm59742 within coordinates of
Rr391410 within coordinates of
Smpd4 1432 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs240677383
MGI SNP Detail		 Chr16:17435890 Gm59742 within coordinates of
Rr391410 within coordinates of
Smpd4 1328 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C G C C G C C C C G C C C C G C C C C C C G C C C C C C C G C C C C
rs263965955
MGI SNP Detail		 Chr16:17435930 Gm59742 within coordinates of
Rr391410 within coordinates of
Rr512417 within coordinates of
Smpd4 1288 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs217371858
MGI SNP Detail		 Chr16:17435956 Gm59742 within coordinates of
Rr391410 within coordinates of
Rr512417 within coordinates of
Smpd4 1262 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs240314206
MGI SNP Detail		 Chr16:17435978 Gm59742 within coordinates of
Rr391410 within coordinates of
Rr512417 within coordinates of
Smpd4 1240 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs252322303
MGI SNP Detail		 Chr16:17436017 Gm59742 within coordinates of
Rr391410 within coordinates of
Rr512417 within coordinates of
Smpd4 1201 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs219684187
MGI SNP Detail		 Chr16:17436085 Gm59742 within coordinates of
Rr391410 within coordinates of
Rr512417 within coordinates of
Smpd4 1133 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs238258513
MGI SNP Detail		 Chr16:17436106 Gm59742 within coordinates of
Rr391410 within coordinates of
Rr512417 within coordinates of
Smpd4 1112 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G C G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G
rs249658564
MGI SNP Detail		 Chr16:17436127 Gm59742 within coordinates of
Rr391410 within coordinates of
Rr512417 within coordinates of
Smpd4 1091 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs227227044
MGI SNP Detail		 Chr16:17436144 Gm59742 within coordinates of
Rr391410 within coordinates of
Rr512417 within coordinates of
Smpd4 1074 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs247560882
MGI SNP Detail		 Chr16:17436145 Gm59742 within coordinates of
Rr391410 within coordinates of
Rr512417 within coordinates of
Smpd4 1073 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs265915619
MGI SNP Detail		 Chr16:17436256 Gm59742 within coordinates of
Rr391410 within coordinates of
Rr512418 within coordinates of
Smpd4 962 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs232397464
MGI SNP Detail		 Chr16:17436273 Gm59742 within coordinates of
Rr391410 within coordinates of
Rr512418 within coordinates of
Smpd4 945 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs32333875
MGI SNP Detail		 Chr16:17436281 Gm59742 within coordinates of
Rr391410 within coordinates of
Rr512418 within coordinates of
Smpd4 937 bp upstream
 SNP C/T T T T T T T T T T T T T T C T
rs256179217
MGI SNP Detail		 Chr16:17436289 Gm59742 within coordinates of
Rr391410 within coordinates of
Rr512418 within coordinates of
Smpd4 929 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs224998968
MGI SNP Detail		 Chr16:17436292 Gm59742 within coordinates of
Rr391410 within coordinates of
Rr512418 within coordinates of
Smpd4 926 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs32333877
MGI SNP Detail		 Chr16:17436333 Gm59742 within coordinates of
Rr391410 within coordinates of
Rr512418 within coordinates of
Smpd4 885 bp upstream
 SNP C/T C C C C C C T C C C C C C C C
rs211869802
MGI SNP Detail		 Chr16:17436366 Gm59742 within coordinates of
Rr391410 within coordinates of
Rr512418 within coordinates of
Smpd4 852 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs234573202
MGI SNP Detail		 Chr16:17436405 Gm59742 within coordinates of
Rr391410 within coordinates of
Rr512418 within coordinates of
Smpd4 813 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs253675033
MGI SNP Detail		 Chr16:17436509 Gm59742 within coordinates of
Rr512418 within coordinates of
Smpd4 709 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs217549738
MGI SNP Detail		 Chr16:17436513 Gm59742 within coordinates of
Rr512418 within coordinates of
Smpd4 705 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs238263075
MGI SNP Detail		 Chr16:17436524 Gm59742 within coordinates of
Rr512418 within coordinates of
Smpd4 694 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs252285652
MGI SNP Detail		 Chr16:17436557 Gm59742 within coordinates of
Smpd4 661 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs213938963
MGI SNP Detail		 Chr16:17436573 Gm59742 within coordinates of
Smpd4 645 bp upstream
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs231031699
MGI SNP Detail		 Chr16:17436582 Gm59742 within coordinates of
Smpd4 636 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs249772166
MGI SNP Detail		 Chr16:17436700 Gm59742 within coordinates of
Smpd4 518 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs226967542
MGI SNP Detail		 Chr16:17436831 Gm59742 within coordinates of
Smpd4 387 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs250249149
MGI SNP Detail		 Chr16:17436961 Gm59742 within coordinates of
Rr512419 within coordinates of
Smpd4 257 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs259542106
MGI SNP Detail		 Chr16:17437022 Gm59742 within coordinates of
Rr512419 within coordinates of
Smpd4 196 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs225115547
MGI SNP Detail		 Chr16:17437106 Gm59742 within coordinates of
Rr370058 within coordinates of
Rr512419 within coordinates of
Smpd4 112 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs239218638
MGI SNP Detail		 Chr16:17437149 Cpgi8019 within coordinates of
Gm59742 within coordinates of
Rr370058 within coordinates of
Rr512419 within coordinates of
Smpd4 69 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs32333879
MGI SNP Detail		 Chr16:17437154 Cpgi8019 within coordinates of
Gm59742 within coordinates of
Rr370058 within coordinates of
Rr512419 within coordinates of
Smpd4 64 bp upstream
 SNP A/T A A A A A T A A A T A A T A
rs225127280
MGI SNP Detail		 Chr16:17437159 Cpgi8019 within coordinates of
Gm59742 within coordinates of
Rr370058 within coordinates of
Rr512419 within coordinates of
Smpd4 59 bp upstream
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs32333881
MGI SNP Detail		 Chr16:17437175 Cpgi8019 within coordinates of
Gm59742 within coordinates of
Rr370058 within coordinates of
Rr512419 within coordinates of
Smpd4 43 bp upstream
 SNP C/G G G G G C G G G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs264539807
MGI SNP Detail		 Chr16:17437204 Cpgi8019 within coordinates of
Gm59742 within coordinates of
Rr370058 within coordinates of
Rr512419 within coordinates of
Smpd4 14 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs233658495
MGI SNP Detail		 Chr16:17437217 Cpgi8019 within coordinates of
Gm59742 within coordinates of
Rr370058 within coordinates of
Rr512419 within coordinates of
Smpd4 1 bp upstream
Tssr137314 within coordinates of
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs258803945
MGI SNP Detail
Alliance Variant		 Chr16:17437519 Cpgi8019 within coordinates of
Rr512419 within coordinates of
Smpd4 Coding-NonSynonymous
Smpd4 Intron
Smpd4 mRNA-UTR
Smpd4 Noncoding-Transcript-Variant
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs263416747
MGI SNP Detail
Alliance Variant		 Chr16:17437522 Cpgi8019 within coordinates of
Rr512419 within coordinates of
Smpd4 Coding-NonSynonymous
Smpd4 Intron
Smpd4 mRNA-UTR
Smpd4 Noncoding-Transcript-Variant
Smpd4 Splice-Site
 SNP C/G C C C C C C C C C C C C C C C C C C C G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
rs232548546
MGI SNP Detail
Alliance Variant		 Chr16:17437641 Cpgi8019 within coordinates of
Rr512419 within coordinates of
Smpd4 Intron
Smpd4 Noncoding-Transcript-Variant
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs246054500
MGI SNP Detail
Alliance Variant		 Chr16:17437798 Cpgi8019 within coordinates of
Smpd4 Intron
Smpd4 Noncoding-Transcript-Variant
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs214025266
MGI SNP Detail
Alliance Variant		 Chr16:17437877 Cpgi8019 within coordinates of
Smpd4 Intron
Smpd4 Noncoding-Transcript-Variant
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs230980019
MGI SNP Detail
Alliance Variant		 Chr16:17437955 Cpgi8019 within coordinates of
Smpd4 Intron
Smpd4 Noncoding-Transcript-Variant
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs243830500
MGI SNP Detail
Alliance Variant		 Chr16:17437959 Cpgi8019 within coordinates of
Smpd4 Intron
Smpd4 Noncoding-Transcript-Variant
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs32333883
MGI SNP Detail
Alliance Variant		 Chr16:17438075 Smpd4 Intron
Smpd4 Noncoding-Transcript-Variant
 SNP C/T T T T T T T C T T T T T T T T
rs580495778
MGI SNP Detail
Alliance Variant		 Chr16:17438179 Smpd4 Intron
Smpd4 Noncoding-Transcript-Variant
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs32334645
MGI SNP Detail
Alliance Variant		 Chr16:17438256 Smpd4 Intron
Smpd4 Noncoding-Transcript-Variant
 SNP G/T G G G G G G G G G G T G G T G
rs263378327
MGI SNP Detail
Alliance Variant		 Chr16:17438392 Smpd4 Intron
Smpd4 Noncoding-Transcript-Variant
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs224303358
MGI SNP Detail
Alliance Variant		 Chr16:17438478 Smpd4 Intron
Smpd4 mRNA-UTR
Smpd4 Noncoding-Transcript-Variant
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs32334647
MGI SNP Detail
Alliance Variant		 Chr16:17438537 Smpd4 Intron
Smpd4 Noncoding-Transcript-Variant
 SNP A/C C C C C C C C C C C A C C A C
rs250445981
MGI SNP Detail
Alliance Variant		 Chr16:17438578 Smpd4 Intron
Smpd4 mRNA-UTR
Smpd4 Noncoding-Transcript-Variant
Smpd4 Splice-Site
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs32334649
MGI SNP Detail
Alliance Variant		 Chr16:17438580 Smpd4 Intron
Smpd4 mRNA-UTR
Smpd4 Noncoding-Transcript-Variant
 SNP A/G G G G G G G G G G A G G A G
rs32334651
MGI SNP Detail
Alliance Variant		 Chr16:17438693 Smpd4 Intron
Smpd4 Noncoding-Transcript-Variant
 SNP C/T T T T T T T C T T T C T T C T
rs261413975
MGI SNP Detail
Alliance Variant		 Chr16:17438711 Smpd4 Intron
Smpd4 Noncoding-Transcript-Variant
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G A A A A A G A A A A A A G A A A A A A A A A A A A
rs226844586
MGI SNP Detail
Alliance Variant		 Chr16:17438839 Smpd4 Intron
Smpd4 Noncoding-Transcript-Variant
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs247175960
MGI SNP Detail
Alliance Variant		 Chr16:17438844 Smpd4 Intron
Smpd4 Noncoding-Transcript-Variant
 SNP A/C A A A A A A A A A A A A A A A A A A A C A A C A A A A C A A A A A C A A A A A A C A A A A A A A C A A A A
rs265663012
MGI SNP Detail
Alliance Variant		 Chr16:17438919 Smpd4 Intron
Smpd4 Noncoding-Transcript-Variant
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs227027011
MGI SNP Detail
Alliance Variant		 Chr16:17439029 Smpd4 Intron
Smpd4 Noncoding-Transcript-Variant
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs245476211
MGI SNP Detail
Alliance Variant		 Chr16:17439085 Smpd4 Intron
Smpd4 Noncoding-Transcript-Variant
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs257915657
MGI SNP Detail
Alliance Variant		 Chr16:17439110 Smpd4 Intron
Smpd4 Noncoding-Transcript-Variant
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs225336870
MGI SNP Detail
Alliance Variant		 Chr16:17439116 Smpd4 Intron
Smpd4 Noncoding-Transcript-Variant
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs253095944
MGI SNP Detail
Alliance Variant		 Chr16:17439168 Smpd4 Intron
Smpd4 Noncoding-Transcript-Variant
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs32334653
MGI SNP Detail
Alliance Variant		 Chr16:17439302 Smpd4 Intron
Smpd4 mRNA-UTR
Smpd4 Noncoding-Transcript-Variant
Smpd4 Splice-Site
 SNP A/G A A A A A G A A G A A G A
rs242273702
MGI SNP Detail
Alliance Variant		 Chr16:17439333 Smpd4 Coding-NonSynonymous
Smpd4 Intron
Smpd4 mRNA-UTR
Smpd4 Noncoding-Transcript-Variant
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs253307627
MGI SNP Detail
Alliance Variant		 Chr16:17439625 Smpd4 Intron
Smpd4 Noncoding-Transcript-Variant
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs216424619
MGI SNP Detail
Alliance Variant		 Chr16:17439643 Smpd4 Intron
Smpd4 Noncoding-Transcript-Variant
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C T T T T T C T T T T T T C T T T T T T T C T T T T
rs232190599
MGI SNP Detail
Alliance Variant		 Chr16:17439646 Smpd4 Intron
Smpd4 Noncoding-Transcript-Variant
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A T A A A A T A A A A A T A A A A A A T A A A A A A A A A A A A
rs249818452
MGI SNP Detail
Alliance Variant		 Chr16:17439671 Smpd4 Intron
Smpd4 Noncoding-Transcript-Variant
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs219327599
MGI SNP Detail
Alliance Variant		 Chr16:17439691 Smpd4 Intron
Smpd4 Noncoding-Transcript-Variant
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs230716451
MGI SNP Detail
Alliance Variant		 Chr16:17439714 Smpd4 Intron
Smpd4 Noncoding-Transcript-Variant
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs32327005
MGI SNP Detail
Alliance Variant		 Chr16:17439753 Smpd4 Intron
Smpd4 Noncoding-Transcript-Variant
 SNP A/T A A A A A A A A A A T A A T A
rs583148082
MGI SNP Detail
Alliance Variant		 Chr16:17439795 Smpd4 Intron
Smpd4 Noncoding-Transcript-Variant
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A T A A A A A A A A A A A
rs586771643
MGI SNP Detail
Alliance Variant		 Chr16:17439799 Smpd4 Intron
Smpd4 Noncoding-Transcript-Variant
 SNP A/T A A A A A A A A A A A A A A A A A A A T A A T A A A A A A A A A A A A T A A A A A A A A A A
rs579742934
MGI SNP Detail
Alliance Variant		 Chr16:17439803 Smpd4 Intron
Smpd4 Noncoding-Transcript-Variant
 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs581239020
MGI SNP Detail
Alliance Variant		 Chr16:17439841 Smpd4 Intron
Smpd4 Noncoding-Transcript-Variant
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs584687763
MGI SNP Detail
Alliance Variant		 Chr16:17439851 Smpd4 Intron
Smpd4 Noncoding-Transcript-Variant
 SNP A/T A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs263450325
MGI SNP Detail
Alliance Variant		 Chr16:17440243 Smpd4 Intron
Smpd4 Noncoding-Transcript-Variant
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs220860661
MGI SNP Detail
Alliance Variant		 Chr16:17440264 Smpd4 Intron
Smpd4 Noncoding-Transcript-Variant
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs239337570
MGI SNP Detail
Alliance Variant		 Chr16:17440353 Smpd4 Intron
Smpd4 Noncoding-Transcript-Variant
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs587440413
MGI SNP Detail
Alliance Variant		 Chr16:17440388 Smpd4 Intron
Smpd4 Noncoding-Transcript-Variant
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs257238199
MGI SNP Detail
Alliance Variant		 Chr16:17440482 Smpd4 Intron
Smpd4 Noncoding-Transcript-Variant
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs225296083
MGI SNP Detail
Alliance Variant		 Chr16:17440505 Smpd4 Intron
Smpd4 Noncoding-Transcript-Variant
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs581521273
MGI SNP Detail
Alliance Variant		 Chr16:17440547 Smpd4 Intron
Smpd4 Noncoding-Transcript-Variant
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs241684147
MGI SNP Detail
Alliance Variant		 Chr16:17440549 Smpd4 Intron
Smpd4 Noncoding-Transcript-Variant
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
rs584223150
MGI SNP Detail
Alliance Variant		 Chr16:17440571 Smpd4 Intron
Smpd4 Noncoding-Transcript-Variant
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G A G G G G G G A G G G G G G G G G G G G
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Showing SNP(s) 1 - 100 of 503
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
03/18/2025
MGI 6.24 		The Jackson Laboratory