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Mouse SNP Summary
Symbol
Name
ID 		Pcdhb16
protocadherin beta 16
MGI:2136752

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/HeJ
A/J
AKR/J
B10.D2-Hc<0> H2<d> H2-T18<c>/oSnJ
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MRL/MpJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs226168455
MGI SNP Detail		 Chr18:37608888 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb15 within coordinates of
Pcdhb16 1979 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs242355979
MGI SNP Detail		 Chr18:37608983 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb15 within coordinates of
Pcdhb16 1884 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G A G G G G G G G G A A G G G A G G G G G G G G G G G G G G G G G G G
rs13490727
MGI SNP Detail		 Chr18:37609083 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb15 within coordinates of
Pcdhb16 1784 bp upstream
 SNP A/G A A A A A A A A G A A G G A A A A A A A
rs13490728
MGI SNP Detail		 Chr18:37609141 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb15 within coordinates of
Pcdhb16 1726 bp upstream
 SNP C/T C C C C C C C C C C C T C C T T C C C C C C C
rs31769677
MGI SNP Detail		 Chr18:37609156 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb15 within coordinates of
Pcdhb16 1711 bp upstream
 SNP A/G G G G G G G G G G G G G G A G
rs215522242
MGI SNP Detail		 Chr18:37609178 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb15 within coordinates of
Pcdhb16 1689 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C
rs241055334
MGI SNP Detail		 Chr18:37609207 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb15 within coordinates of
Pcdhb16 1660 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs13499563
MGI SNP Detail		 Chr18:37609244 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb15 within coordinates of
Pcdhb16 1623 bp upstream
 SNP C/G G G G G G G G G G C G G C C G G G G G G
rs220226955
MGI SNP Detail		 Chr18:37609266 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb15 within coordinates of
Pcdhb16 1601 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A G G G A A G A A A A A A A A A A A A G A A A A
rs229688463
MGI SNP Detail		 Chr18:37609283 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb15 within coordinates of
Pcdhb16 1584 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs250060586
MGI SNP Detail		 Chr18:37609286 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb15 within coordinates of
Pcdhb16 1581 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs31769676
MGI SNP Detail		 Chr18:37609300 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb15 within coordinates of
Pcdhb16 1567 bp upstream
 SNP C/G G G G G G G C G G C C G G G G
rs248124234
MGI SNP Detail		 Chr18:37609338 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb15 within coordinates of
Pcdhb16 1529 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs266228883
MGI SNP Detail		 Chr18:37609390 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb15 within coordinates of
Pcdhb16 1477 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G T G G G G G G G G T T G G G T G G G G G G G G G G G G G G G G G G G
rs13490729
MGI SNP Detail		 Chr18:37609396 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 1471 bp upstream
 SNP A/G G G G G G G G G G G G G G A
rs249432302
MGI SNP Detail		 Chr18:37609403 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 1464 bp upstream
 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T
rs13499564
MGI SNP Detail		 Chr18:37609457 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 1410 bp upstream
 SNP C/T T T T T T T T T C T T T T T
rs581860542
MGI SNP Detail		 Chr18:37609485 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 1382 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G A G G G G G G G G A A G G G G G G G G G G G G G G G G G G G G G
rs583479351
MGI SNP Detail		 Chr18:37609486 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 1381 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A T A A A A A A A A T T A A A A A A A A A A A A A A A A A A A A A
rs226403033
MGI SNP Detail		 Chr18:37609515 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 1352 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T A T T T T T T T T A A T T T T T T T T T T T T T T T T T T T T T T
rs13490730
MGI SNP Detail		 Chr18:37609578 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 1289 bp upstream
 SNP C/T C C T C C
rs13490731
MGI SNP Detail		 Chr18:37609656 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 1211 bp upstream
 SNP A/T T T T T T T T T T T T A T T T A T T T T T T T
rs13499565
MGI SNP Detail		 Chr18:37609683 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 1184 bp upstream
 SNP A/T A A A A A A A A A A T A A A T A A A A A A A
rs13490732
MGI SNP Detail		 Chr18:37609691 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 1176 bp upstream
 SNP A/C C C C C C C C C C C C C C C A
rs216063117
MGI SNP Detail		 Chr18:37609714 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 1153 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/HeJ
A/J
AKR/J
B10.D2-Hc<0> H2<d> H2-T18<c>/oSnJ
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MRL/MpJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs13499566
MGI SNP Detail		 Chr18:37609729 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 1138 bp upstream
 SNP C/T C C C C C C C C C C C T C C T C C C C C C C
rs255050961
MGI SNP Detail		 Chr18:37609751 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 1116 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A T A A A A A A A A T T A A A T A A A A A A A A A A A A A A A A A A A
rs214380298
MGI SNP Detail		 Chr18:37609754 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 1113 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T T C C T T T C T T T T T T T T T T T T T T T T T T T
rs229847238
MGI SNP Detail		 Chr18:37609791 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 1076 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G G G A A A G A A A A A A G A A A A A A A G A A A A
rs250148223
MGI SNP Detail		 Chr18:37609881 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 986 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs216383333
MGI SNP Detail		 Chr18:37609922 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 945 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs242829389
MGI SNP Detail		 Chr18:37609928 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 939 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs258439681
MGI SNP Detail		 Chr18:37609930 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 937 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs224872123
MGI SNP Detail		 Chr18:37609947 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 920 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs246732774
MGI SNP Detail		 Chr18:37610019 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 848 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs13490733
MGI SNP Detail		 Chr18:37610041 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 826 bp upstream
 SNP A/T T T T T T T T T T T T T T T A
rs220406301
MGI SNP Detail		 Chr18:37610051 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 816 bp upstream
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs236252381
MGI SNP Detail		 Chr18:37610076 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 791 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs254713482
MGI SNP Detail		 Chr18:37610102 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 765 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs233172270
MGI SNP Detail		 Chr18:37610112 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 755 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs251368163
MGI SNP Detail		 Chr18:37610120 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 747 bp upstream
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs263279204
MGI SNP Detail		 Chr18:37610124 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 743 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs233259323
MGI SNP Detail		 Chr18:37610149 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 718 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
rs244887195
MGI SNP Detail		 Chr18:37610192 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 675 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs214270849
MGI SNP Detail		 Chr18:37610198 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 669 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs31769675
MGI SNP Detail		 Chr18:37610224 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 643 bp upstream
 SNP G/T T T T T T T G T T G G T T T T
rs244234340
MGI SNP Detail		 Chr18:37610238 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 629 bp upstream
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T T
rs218040463
MGI SNP Detail		 Chr18:37610259 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 608 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A A A A A A G G G A A A G A A A A A A A A A A A A A A A A A A A
rs240000574
MGI SNP Detail		 Chr18:37610261 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 606 bp upstream
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs262689151
MGI SNP Detail		 Chr18:37610267 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 600 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/HeJ
A/J
AKR/J
B10.D2-Hc<0> H2<d> H2-T18<c>/oSnJ
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MRL/MpJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs216417739
MGI SNP Detail		 Chr18:37610286 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 581 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs237763960
MGI SNP Detail		 Chr18:37610358 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 509 bp upstream
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs250024897
MGI SNP Detail		 Chr18:37610371 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 496 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs220255476
MGI SNP Detail		 Chr18:37610386 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 481 bp upstream
 SNP A/G/T T T T T T T T T T T T T T T T T T T T T T T G T T T T G T T T T T T T T T T T T T T T T T T T T A T T T T
rs236293039
MGI SNP Detail		 Chr18:37610424 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 443 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs249292176
MGI SNP Detail		 Chr18:37610475 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 392 bp upstream
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs226608246
MGI SNP Detail		 Chr18:37610480 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 387 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs248414852
MGI SNP Detail		 Chr18:37610482 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 385 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs13499567
MGI SNP Detail		 Chr18:37610488 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 379 bp upstream
 SNP A/G A A A A A A A A A A A G A A G G A A A A A A
rs31769674
MGI SNP Detail		 Chr18:37610563 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 304 bp upstream
 SNP A/T T T T T T T T T T A T T T T T
rs580830711
MGI SNP Detail		 Chr18:37610569 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 298 bp upstream
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs583283659
MGI SNP Detail		 Chr18:37610571 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 296 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs587074472
MGI SNP Detail		 Chr18:37610575 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 292 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs13490734
MGI SNP Detail		 Chr18:37610703 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 164 bp upstream
 SNP C/T T T T T T T T T T C T T T T T
rs258244140
MGI SNP Detail		 Chr18:37610709 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 158 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T C C C C C T C C C C C C T C C C C C C C C C C C C
rs224112877
MGI SNP Detail		 Chr18:37610796 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 71 bp upstream
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T C T T T T
rs244129411
MGI SNP Detail		 Chr18:37610805 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 62 bp upstream
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs264008339
MGI SNP Detail		 Chr18:37610809 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 58 bp upstream
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C
rs13490735
MGI SNP Detail		 Chr18:37610928 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 within coordinates of
 SNP A/G G G G G G G G G G G G G G A
rs13499568
MGI SNP Detail		 Chr18:37611022 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 within coordinates of
 SNP A/T A A A A A A A A T
rs216775211
MGI SNP Detail		 Chr18:37611023 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs231243887
MGI SNP Detail		 Chr18:37611037 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs244350943
MGI SNP Detail		 Chr18:37611049 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs211808266
MGI SNP Detail		 Chr18:37611055 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs230269120
MGI SNP Detail		 Chr18:37611118 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/HeJ
A/J
AKR/J
B10.D2-Hc<0> H2<d> H2-T18<c>/oSnJ
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MRL/MpJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs13490736
MGI SNP Detail		 Chr18:37611132 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 within coordinates of
 SNP C/T C C C C C C C C C C C C C C T
rs226200689
MGI SNP Detail		 Chr18:37611140 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 within coordinates of
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C
rs243493715
MGI SNP Detail		 Chr18:37611185 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs258765468
MGI SNP Detail		 Chr18:37611188 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs225279606
MGI SNP Detail		 Chr18:37611222 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T C T T T T T C C T T T T T T T T T T T T T T T T T T C T T T T
rs239114628
MGI SNP Detail		 Chr18:37611225 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C
rs258524015
MGI SNP Detail		 Chr18:37611280 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs13499569
MGI SNP Detail		 Chr18:37611311 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 within coordinates of
 SNP A/C A A A A A A A A A A A A A C
rs13490737
MGI SNP Detail		 Chr18:37611368 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 within coordinates of
 SNP A/G G G G G G G G G G G A G G G A G G G G G G G
rs13490738
MGI SNP Detail		 Chr18:37611558 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 within coordinates of
 SNP A/G A A A A A A A A A A A A G
rs13499570
MGI SNP Detail		 Chr18:37611599 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 within coordinates of
 SNP A/C A A A A A A A A A A A A A A C
rs257197399
MGI SNP Detail		 Chr18:37611602 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs13490739
MGI SNP Detail		 Chr18:37611635 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 within coordinates of
 SNP C/T C C C C C C C C C C C C T
rs31768033
MGI SNP Detail		 Chr18:37611695 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 within coordinates of
 SNP C/T T T T T T T C T T T T T T T
rs244249960
MGI SNP Detail		 Chr18:37611703 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T C T T T T C C C T T T C T T T T T T T T T T T T T T C T T T T
rs211845100
MGI SNP Detail		 Chr18:37611704 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs230477208
MGI SNP Detail		 Chr18:37611726 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs250210671
MGI SNP Detail		 Chr18:37611747 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 within coordinates of
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs31768032
MGI SNP Detail		 Chr18:37611787 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 within coordinates of
 SNP A/C A A A A A A A A A C A A A A
rs240736948
MGI SNP Detail		 Chr18:37611790 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C T C C T C C C C T T T C C C T C C C C C C C C C C C C C C T C C C C
rs263101976
MGI SNP Detail		 Chr18:37611791 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A G A A G A A A A G G G A A A G A A A A A A A A A A A A A A A A A A A
rs222198340
MGI SNP Detail		 Chr18:37611812 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 within coordinates of
 SNP A/T A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A
rs231840817
MGI SNP Detail		 Chr18:37611866 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T C T T T T T T T C C C T T T C T T T T T T T T T T T T T T C T T T T
rs252083783
MGI SNP Detail		 Chr18:37611870 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C G C C G C C C C G G G C C C G C C C C C C C C C C C C C C G C C C C
rs218346343
MGI SNP Detail		 Chr18:37611890 Gm37388 within coordinates of
Gm38666 within coordinates of
Gm38667 within coordinates of
Pcdha4b within coordinates of
Pcdhb16 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
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Showing SNP(s) 1 - 100 of 264
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory