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Mouse SNP Summary
Symbol
Name
ID 		Cpgi687
CpG island 687
MGI:5665816

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Showing SNP(s) 1 - 70 of 70

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SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs255602156
MGI SNP Detail		 Chr1:126418280 Cpgi687 1985 bp proximal
Nckap5 within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs46554973
MGI SNP Detail		 Chr1:126418322 Cpgi687 1943 bp proximal
Nckap5 within coordinates of
 SNP A/G G G G G G G A G G G G G G G G
rs584404446
MGI SNP Detail		 Chr1:126418372 Cpgi687 1893 bp proximal
Nckap5 within coordinates of
 SNP A/T T T T T T T T T T T T T T T T T T T A T T A T T T T T T T T T T T T T T T T A T T T T T T T T T T T T
rs241502578
MGI SNP Detail		 Chr1:126418427 Cpgi687 1838 bp proximal
Nckap5 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs50057483
MGI SNP Detail		 Chr1:126418437 Cpgi687 1828 bp proximal
Nckap5 within coordinates of
 SNP A/C A A A A A A C A A A C A A A A
rs223297666
MGI SNP Detail		 Chr1:126418527 Cpgi687 1738 bp proximal
Nckap5 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs243361787
MGI SNP Detail		 Chr1:126418529 Cpgi687 1736 bp proximal
Nckap5 within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs264873015
MGI SNP Detail		 Chr1:126418710 Cpgi687 1555 bp proximal
Nckap5 within coordinates of
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs51180086
MGI SNP Detail		 Chr1:126418791 Cpgi687 1474 bp proximal
Nckap5 within coordinates of
 SNP A/C C C C C C C C C C C C C C A C
rs48077563
MGI SNP Detail		 Chr1:126418843 Cpgi687 1422 bp proximal
Nckap5 within coordinates of
 SNP G/T G G G G G G G G G G G G G T G
rs258967802
MGI SNP Detail		 Chr1:126418913 Cpgi687 1352 bp proximal
Nckap5 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs227588538
MGI SNP Detail		 Chr1:126418916 Cpgi687 1349 bp proximal
Nckap5 within coordinates of
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T
rs257038026
MGI SNP Detail		 Chr1:126418932 Cpgi687 1333 bp proximal
Nckap5 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs214637275
MGI SNP Detail		 Chr1:126418936 Cpgi687 1329 bp proximal
Nckap5 within coordinates of
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs237739186
MGI SNP Detail		 Chr1:126419171 Cpgi687 1094 bp proximal
Nckap5 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs249688561
MGI SNP Detail		 Chr1:126419216 Cpgi687 1049 bp proximal
Nckap5 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs211869427
MGI SNP Detail		 Chr1:126419220 Cpgi687 1045 bp proximal
Nckap5 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs236054977
MGI SNP Detail		 Chr1:126419224 Cpgi687 1041 bp proximal
Nckap5 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs48854811
MGI SNP Detail		 Chr1:126419263 Cpgi687 1002 bp proximal
Nckap5 within coordinates of
 SNP A/C C C C C C C C A C C C C C C C
rs223062995
MGI SNP Detail		 Chr1:126419358 Cpgi687 907 bp proximal
Nckap5 within coordinates of
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
rs235181127
MGI SNP Detail		 Chr1:126419428 Cpgi687 837 bp proximal
Nckap5 within coordinates of
 SNP G/T T T T T T T T T T T T T T T T T T T T G T T T T T T T T T T T T T G T T T T T T T T T T T T T T T T T T T
rs263031669
MGI SNP Detail		 Chr1:126419557 Cpgi687 708 bp proximal
Nckap5 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs223773980
MGI SNP Detail		 Chr1:126419572 Cpgi687 693 bp proximal
Nckap5 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs246310085
MGI SNP Detail		 Chr1:126419588 Cpgi687 677 bp proximal
Nckap5 within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs262023420
MGI SNP Detail		 Chr1:126419633 Cpgi687 632 bp proximal
Nckap5 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs218144705
MGI SNP Detail		 Chr1:126419739 Cpgi687 526 bp proximal
Nckap5 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs32322038
MGI SNP Detail		 Chr1:126419760 Cpgi687 505 bp proximal
Nckap5 within coordinates of
 SNP A/C C C C C C C A C C A A C C A A C C A
rs259089738
MGI SNP Detail		 Chr1:126419764 Cpgi687 501 bp proximal
Nckap5 within coordinates of
 SNP A/C A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs227507729
MGI SNP Detail		 Chr1:126419849 Cpgi687 416 bp proximal
Nckap5 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs31374577
MGI SNP Detail		 Chr1:126419869 Cpgi687 396 bp proximal
Nckap5 within coordinates of
 SNP A/G G G G G G G A G G A A G G A A G A A
rs265244644
MGI SNP Detail		 Chr1:126419973 Cpgi687 292 bp proximal
Nckap5 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs229706677
MGI SNP Detail		 Chr1:126420116 Cpgi687 149 bp proximal
Nckap5 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A G A A A A
rs48105402
MGI SNP Detail		 Chr1:126420117 Cpgi687 148 bp proximal
Nckap5 within coordinates of
 SNP C/G G G G G G G C G G G C G G C G
rs211829606
MGI SNP Detail		 Chr1:126420172 Cpgi687 93 bp proximal
Nckap5 within coordinates of
 SNP A/G A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A G A A A A
rs46872904
MGI SNP Detail		 Chr1:126420182 Cpgi687 83 bp proximal
Nckap5 within coordinates of
 SNP A/G G G G G G G G G G G A G G G G
rs30497003
MGI SNP Detail		 Chr1:126420294 Cpgi687 within coordinates of
Nckap5 within coordinates of
 SNP A/G A A A A A A G G A G G A G G G G G G G
rs45684552
MGI SNP Detail		 Chr1:126420430 Cpgi687 within coordinates of
Nckap5 within coordinates of
Tssr13401 within coordinates of
 SNP C/G C C C C C C C C C C G C C C C
rs253024389
MGI SNP Detail		 Chr1:126420453 Cpgi687 within coordinates of
Nckap5 within coordinates of
Tssr13401 within coordinates of
 SNP A/C C A
rs247660836
MGI SNP Detail		 Chr1:126420520 Cpgi687 within coordinates of
Nckap5 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G A G G A G G A G A G G G G G G G G G A G A G G G G G G
rs215616524
MGI SNP Detail		 Chr1:126420651 Cpgi687 83 bp distal
Nckap5 within coordinates of
Tssr13405 within coordinates of
 SNP A/C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C C C C C C C C C A C C C C C C C C C C C C
rs241525828
MGI SNP Detail		 Chr1:126420711 Cpgi687 143 bp distal
Nckap5 within coordinates of
 SNP C/G C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
rs258987965
MGI SNP Detail		 Chr1:126420980 Cpgi687 412 bp distal
Nckap5 within coordinates of
 SNP G/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T G T T T T
rs578693659
MGI SNP Detail		 Chr1:126421005 Cpgi687 437 bp distal
Nckap5 within coordinates of
 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs52140759
MGI SNP Detail		 Chr1:126421070 Cpgi687 502 bp distal
Nckap5 within coordinates of
 SNP G G G
rs581207219
MGI SNP Detail		 Chr1:126421186 Cpgi687 618 bp distal
Nckap5 within coordinates of
 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
rs215683593
MGI SNP Detail		 Chr1:126421259 Cpgi687 691 bp distal
Nckap5 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs51907302
MGI SNP Detail		 Chr1:126421339 Cpgi687 771 bp distal
Nckap5 within coordinates of
 SNP C/T T T T T T T T T T T C T T T T
rs249226864
MGI SNP Detail		 Chr1:126421390 Cpgi687 822 bp distal
Nckap5 within coordinates of
 SNP G/T G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G
rs218069060
MGI SNP Detail		 Chr1:126421421 Cpgi687 853 bp distal
Nckap5 within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
rs241738805
MGI SNP Detail		 Chr1:126421608 Cpgi687 1040 bp distal
Nckap5 within coordinates of
 SNP C/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G C G G G G
SNP ID
(GRCm39)		 Map Position
(GRCm39)		 Gene & Category Variation
Type		 Allele
Summary
(all strains)
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
129X1/SvJ
A/J
AKR/J
B10.RIII-H2<r> H2-T18<b>/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3<tf>/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/10J
C57BL/10SnJ
C57BL/6J
C57BL/6NJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
MSM/Ms
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWD/PhJ
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs252659217
MGI SNP Detail		 Chr1:126421631 Cpgi687 1063 bp distal
Nckap5 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs221501331
MGI SNP Detail		 Chr1:126421658 Cpgi687 1090 bp distal
Nckap5 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs48243144
MGI SNP Detail		 Chr1:126421881 Cpgi687 1313 bp distal
Nckap5 within coordinates of
 SNP A/G A A A A A A G A A A G A A A A
rs262757973
MGI SNP Detail		 Chr1:126421886 Cpgi687 1318 bp distal
Nckap5 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs230225641
MGI SNP Detail		 Chr1:126421926 Cpgi687 1358 bp distal
Nckap5 within coordinates of
 SNP A/T T T T T T T T T T T T T T T T T T T T T T T T T T T T A T T T T T T T T T T T A T T T T T T T T T T T
rs51126740
MGI SNP Detail		 Chr1:126421982 Cpgi687 1414 bp distal
Nckap5 within coordinates of
 SNP C/T T T T T T T T T T C C T T C C T T T
rs255919002
MGI SNP Detail		 Chr1:126421984 Cpgi687 1416 bp distal
Nckap5 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G A G G G G G G A G G G G G G G G G G G
rs228990639
MGI SNP Detail		 Chr1:126422082 Cpgi687 1514 bp distal
Nckap5 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G
rs247804377
MGI SNP Detail		 Chr1:126422197 Cpgi687 1629 bp distal
Nckap5 within coordinates of
 SNP A/C A A A A A A A A A A A A A A A A A A A C A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
rs48960890
MGI SNP Detail		 Chr1:126422262 Cpgi687 1694 bp distal
Nckap5 within coordinates of
 SNP A/G G G G G G G A G G G G G G G G
rs584271886
MGI SNP Detail		 Chr1:126422278 Cpgi687 1710 bp distal
Nckap5 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs47328298
MGI SNP Detail		 Chr1:126422291 Cpgi687 1723 bp distal
Nckap5 within coordinates of
 SNP G/T T T T T T T T T T T T T T G T
rs255924905
MGI SNP Detail		 Chr1:126422302 Cpgi687 1734 bp distal
Nckap5 within coordinates of
 SNP C/T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
rs215180387
MGI SNP Detail		 Chr1:126422350 Cpgi687 1782 bp distal
Nckap5 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
rs47506695
MGI SNP Detail		 Chr1:126422356 Cpgi687 1788 bp distal
Nckap5 within coordinates of
 SNP G/T T T T T T T G T T T T T T T T
rs51849196
MGI SNP Detail		 Chr1:126422407 Cpgi687 1839 bp distal
Nckap5 within coordinates of
 SNP A/G A A A A A A G A A A A A A A A
rs212376732
MGI SNP Detail		 Chr1:126422429 Cpgi687 1861 bp distal
Nckap5 within coordinates of
 SNP A/G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
rs48299046
MGI SNP Detail		 Chr1:126422435 Cpgi687 1867 bp distal
Nckap5 within coordinates of
 SNP A/G A A A A A A G A A A A A A A A
rs52200907
MGI SNP Detail		 Chr1:126422518 Cpgi687 1950 bp distal
Nckap5 within coordinates of
 SNP A/T A A A A T A A A A A
rs225450436
MGI SNP Detail		 Chr1:126422562 Cpgi687 1994 bp distal
Nckap5 within coordinates of
 SNP C/T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
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Showing SNP(s) 1 - 70 of 70
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory